EST details — SGN-E390692
| Search information |
| Request: 390692 | Match: SGN-E390692 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C185130 | Clone name: TUS-46-J8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185130 is on microarray TOM1 spot ID 1-1-1.2.12.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C94910 [cLEX-6-E5] | Trace: SGN-T116031 | EST: SGN-E304013 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C94910 [cLEX-6-E5] | Trace: SGN-T116169 | EST: SGN-E304151 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C185130 [TUS-46-J8] | Trace: SGN-T192267 | EST: SGN-E390941 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E390692 | Length: 605 bp (870 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390692 [] (trimmed)
CAGATTAAAAGAAGACAAGGTACTAGTAATCAATTATCCATCATGGCTGTTCACAAGGAAGTTAATTTTGTCGCTTACCTACTAATTGTTCTTGG
AATGTTTCTATATGTTGATGCCAAGGCTTGTACTAGAGAATGTGGTAATCTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATC
CCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAATTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGG
CCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGATGTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTAC
CACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGAAAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGT
ACCCTGTAATGTGACTCTAGACTTGTCCATCTTCTGGATTGCCCAAAATTAAGTAATTAATGTATGAAATAAAAGGATGCACACTTATATAATGA
CATGCTAATCATTATAATGTGGGCATCCAAGTTGT
AATGTTTCTATATGTTGATGCCAAGGCTTGTACTAGAGAATGTGGTAATCTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATC
CCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAATTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGG
CCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGATGTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTAC
CACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGAAAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGT
ACCCTGTAATGTGACTCTAGACTTGTCCATCTTCTGGATTGCCCAAAATTAAGTAATTAATGTATGAAATAAAAGGATGCACACTTATATAATGA
CATGCTAATCATTATAATGTGGGCATCCAAGTTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E390692] | SGN-U578366 | Tomato 200607 | Build 2 | 209 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T192018 [Download][View] | Facility Assigned ID: FA0AAD34DE04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.952 | Expected Error Rate: 0.0177 | Quality Trim Threshold: 12.5 |
Working
