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Expression Template: Les.3762.1.S1_at

Template Basic Information

Template name:	Les.3762.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U576938
External db links:	GenBank: AJ278332.1

Annotations for unigene SGN-U576938 (manual: 3 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-34-N8, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: oxophytodienoate reductase Annotation Keywords: hormone responses; hormone biosynthesis; jasmonic acid biosynthesis; jasmonic acid responses

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|116667814\|pdb\|2HS6\|A	801		100	1188 bp (71.0%)	2
Description:	Chain A, Crystal Structure Of The E291k Mutant Of 12- Oxophytodienoate Reductase 3 (Opr3) From &hellip
arabidopsis	blastx	At2G06050.1	602	3e-172	74.31	1188 bp (71.0%)	2
Description:	Symbols: OPR3 \| OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase \| chr2:2359237-2361968 &hellip
swissprot	blastx	Q9FEW9	801		100	1188 bp (71.0%)	2
Description:	12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3762.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3762.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1027.42	1027.42	734.05	0.71
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	610.21	609.14	101.32	0.17
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	459.88	479.01	62.56	0.14
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	3525.69	4471.98	2037.99	0.58
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	625.28	626.19	28.72	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	211.10	214.20	23.38	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	438.29	452.35	36.45	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	48.58	46.22	6.28	0.13
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	5255.92	5400.16	3721.84	0.71
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	145.86	145.86	70.64	0.48
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	357.26	354.66	64.98	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	276.43	276.43	150.95	0.55
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	147.79	151.33	20.74	0.14
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1422.54	1422.54	859.31	0.60
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	872.57	872.57	2.68	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	929.74	1052.93	284.38	0.31
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	616.10	610.02	52.24	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	84.00	85.80	3.80	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	72.51	72.67	5.52	0.08
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	259.29	259.29	95.76	0.37
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	223.46	208.27	31.73	0.14
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	698.26	698.26	404.30	0.58
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	118.47	125.38	26.62	0.22
	Gene expression data from Micro-Tom root	root	3	3	528.68	537.43	62.09	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	508.367	2e-4	P
	GSM480170 extract 1	1546.47	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	609.137	2e-4	P
	GSM480202 extract 1	712.057	2e-4	P
	GSM480200 extract 1	509.435	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	479.011	2e-4	P
	GSM480212 extract 1	510.643	2e-4	P
	GSM480213 extract 1	389.983	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	4918.5	2e-4	P
	GSM480181 extract 1	1186.59	2e-4	P
	GSM480182 extract 1	4471.98	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	596.122	2e-4	P
	GSM480208 extract 1	626.186	2e-4	P
	GSM480207 extract 1	653.543	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	214.204	2e-4	P
	GSM480210 extract 1	232.761	2e-4	P
	GSM480211 extract 1	186.321	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	452.352	2e-4	P
	GSM480219 extract 1	396.901	2e-4	P
	GSM480220 extract 1	465.614	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	46.2163	2e-4	P
	GSM480221 extract 1	43.8359	2e-4	P
	GSM480223 extract 1	55.7012	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1464.05	2e-4	P
	GSM480192 extract 1	5400.16	2e-4	P
	GSM480190 extract 1	8903.54	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	95.9038	2e-4	P
	GSM480195 extract 1	195.807	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	354.665	2e-4	P
	GSM480198 extract 1	293.614	2e-4	P
	GSM480199 extract 1	423.503	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	383.171	2e-4	P
	GSM480194 extract 1	169.693	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	141.462	2e-4	P
	GSM480231 extract 1	121.39	2e-4	P
	GSM480229 extract 1	161.198	2e-4	P
	GSM480228 extract 1	167.118	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	814.919	2e-4	P
	GSM480168 extract 1	2030.16	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	870.678	2e-4	P
	GSM480173 extract 1	874.466	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1052.93	2e-4	P
	GSM480176 extract 1	604.539	2e-4	P
	GSM480174 extract 1	1131.76	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	610.021	2e-4	P
	GSM480177 extract 1	567.16	2e-4	P
	GSM480178 extract 1	671.111	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	79.6331	2e-4	P
	GSM480204 extract 1	85.7999	2e-4	P
	GSM480203 extract 1	86.5766	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	77.95	2e-4	P
	GSM480217 extract 1	66.9156	2e-4	P
	GSM480215 extract 1	72.6719	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	327.008	2e-4	P
	GSM480186 extract 1	191.577	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	202.188	2e-4	P
	GSM480189 extract 1	259.926	2e-4	P
	GSM480188 extract 1	208.268	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	984.145	2e-4	P
	GSM480184 extract 1	412.373	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	82.9124	2e-4	P
	GSM480225 extract 1	137.467	7e-4	P
	GSM480224 extract 1	113.286	7e-4	P
	GSM480227 extract 1	140.234	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	462.673	2e-4	P
	GSM480167 extract 1	537.434	2e-4	P
	GSM480165 extract 1	585.924	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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