Genome: Solanum pimpinellifolium
 S. pimpinellifolium LA1670 denovo genome
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S. pimpinellifolium LA1670 denovo genomeHitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi, De novo genome assembly of two tomato ancestors, solanum pimpinellifolium and S. lycopersicum var. cerasiforme, by long-read sequencing, DNA Research, 2021;, dsaa029, https://doi.org/10.1093/dnares/dsaa029
| Available Data |
| Download genome data | Genome browser | BLAST |
| S. pimpinellifolium LA2093 denovo genome
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| Disclaimer and data access agreement |
Wang, X., Gao, L., Jiao, C. et al. Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nat Commun 11, 5817 (2020). https://doi.org/10.1038/s41467-020-19682-0.
| Assembly details |
The genome was sequenced at 103X coverage using PacBio technology with an estimated size of 923 Mb.
final assembly total length: 807,612,503 bp
longest contig: 35,406,112 bp
contig N50: 10,912,915 bp
number of gene models: 35,761
99% of the assembly is found in 12 chromosomes
| Available Data |
| Download genome data | Genome browser | BLAST |
| Draft genome LA1589
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| Disclaimer and data access agreement |
These data have been published and are freely accessible. Please cite Nature 485, 635-641 when using this resource.
Please contact D. Ware or Z. B. Lippman (E-mail: ware@cshl.edu or lippman@cshl.edu) with any questions.
| Available Data |
| Bulk Datasets (via FTP) | BLAST |
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