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Expression Template: Les.3080.3.S1_at

Template Basic Information

Template name:	Les.3080.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579808
External db links:	GenBank: AI774892

Annotations for unigene SGN-U579808 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLET-1-N22, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, 40S ribosomal protein S3A" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82623437\|gb\|ABB87133.1\|	436	2e-120	99.15	702 bp (52.0%)	3
Description:	40S ribosomal protein S3a-like [Solanum tuberosum]
arabidopsis	blastx	At4G34670.1	380	1e-105	86.82	657 bp (48.7%)	3
Description:	40S ribosomal protein S3A (RPS3aB) \| chr4:16548729-16550227 FORWARD
swissprot	blastx	P33444	396	1e-109	89.04	657 bp (48.7%)	3
Description:	40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3080.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3080.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2274.72	2274.72	301.09	0.13
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1378.17	1380.37	28.91	0.02
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1284.71	1284.71	51.28	0.04
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1576.36	1602.26	82.19	0.05
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2471.63	2488.85	67.79	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	1731.84	1715.19	71.94	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2926.09	2879.23	99.10	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1997.21	1995.14	6.07	0.00
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2844.41	2990.43	496.46	0.17
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1247.05	1247.05	97.52	0.08
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1819.30	1817.42	8.41	0.00
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1244.33	1244.33	331.28	0.27
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1136.02	1057.82	214.86	0.19
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2244.14	2244.14	306.65	0.14
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1621.66	1621.66	26.57	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1959.75	1967.62	42.42	0.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1955.25	2048.65	215.67	0.11
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	2914.58	2780.42	238.91	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1853.42	1834.68	53.21	0.03
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	3303.97	3287.34	234.65	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2772.15	2680.34	423.02	0.15
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1666.84	1666.84	131.63	0.08
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1270.77	1202.36	208.67	0.16
	Gene expression data from Micro-Tom root	root	3	3	3013.29	2934.41	139.14	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2487.62	2e-4	P
	GSM480170 extract 1	2061.81	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1348.23	2e-4	P
	GSM480217 extract 1	1380.37	2e-4	P
	GSM480215 extract 1	1405.92	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1320.97	2e-4	P
	GSM480186 extract 1	1248.45	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1484.34	2e-4	P
	GSM480188 extract 1	1602.26	2e-4	P
	GSM480189 extract 1	1642.47	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	2396.89	2e-4	P
	GSM480206 extract 1	2488.85	2e-4	P
	GSM480207 extract 1	2529.14	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1810.65	2e-4	P
	GSM480210 extract 1	1715.19	2e-4	P
	GSM480211 extract 1	1669.69	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	2859.11	2e-4	P
	GSM480219 extract 1	2879.23	2e-4	P
	GSM480220 extract 1	3039.93	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1992.45	2e-4	P
	GSM480222 extract 1	1995.14	2e-4	P
	GSM480223 extract 1	2004.04	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	2291.32	2e-4	P
	GSM480192 extract 1	3251.49	2e-4	P
	GSM480190 extract 1	2990.43	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1316.01	2e-4	P
	GSM480195 extract 1	1178.09	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1811.99	2e-4	P
	GSM480198 extract 1	1817.42	2e-4	P
	GSM480199 extract 1	1828.5	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1010.08	2e-4	P
	GSM480194 extract 1	1478.58	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	976.343	2e-4	P
	GSM480230 extract 1	1037	2e-4	P
	GSM480231 extract 1	1452.1	2e-4	P
	GSM480228 extract 1	1078.64	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2027.31	2e-4	P
	GSM480169 extract 1	2460.98	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1640.45	2e-4	P
	GSM480173 extract 1	1602.87	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1967.62	2e-4	P
	GSM480176 extract 1	1913.95	2e-4	P
	GSM480174 extract 1	1997.69	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	2048.65	2e-4	P
	GSM480177 extract 1	1708.62	2e-4	P
	GSM480178 extract 1	2108.48	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2772.91	2e-4	P
	GSM480201 extract 1	2780.42	2e-4	P
	GSM480202 extract 1	3190.42	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1812.11	2e-4	P
	GSM480205 extract 1	1913.46	2e-4	P
	GSM480203 extract 1	1834.68	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	3287.34	2e-4	P
	GSM480213 extract 1	3546.49	2e-4	P
	GSM480214 extract 1	3078.07	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	2680.34	2e-4	P
	GSM480181 extract 1	2402.57	2e-4	P
	GSM480182 extract 1	3233.53	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1573.77	2e-4	P
	GSM480184 extract 1	1759.92	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1104.08	2e-4	P
	GSM480226 extract 1	1228.3	2e-4	P
	GSM480227 extract 1	1574.3	2e-4	P
	GSM480224 extract 1	1176.41	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	3173.95	2e-4	P
	GSM480165 extract 1	2934.41	2e-4	P
	GSM480166 extract 1	2931.51	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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