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Expression Template: LesAffx.57312.1.S1_at

Template Basic Information

Template name:	LesAffx.57312.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578144
External db links:	GenBank: AI780238

Annotations for unigene SGN-U578144 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLES-6-L8, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ankyrin Annotation Keywords: other

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|24745936\|dbj\|BAC23047.1\|	853		96.12	1392 bp (82.6%)	3
Description:	ankyrin-like protein [Solanum tuberosum]
arabidopsis	blastx	At3G04710.1	550	8e-157	63.15	1392 bp (82.6%)	3
Description:	ankyrin repeat family protein \| chr3:1278235-1280948 FORWARD
swissprot	blastx	Q8N6D5	127	1e-28	37.44	651 bp (38.6%)	3
Description:	Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.57312.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.57312.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	136.22	136.22	17.14	0.13
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	249.05	226.37	44.01	0.18
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	508.19	508.19	51.70	0.10
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	660.50	672.52	125.25	0.19
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	551.21	551.97	129.20	0.23
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	211.15	187.69	41.18	0.20
	Gene expression data from Aft red fruit peel	exocarp	3	3	570.93	567.92	7.57	0.01
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	223.79	223.37	21.73	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	382.12	380.35	16.93	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	335.42	327.55	17.09	0.05
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	665.96	665.96	7.23	0.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	598.54	584.34	89.79	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	578.52	578.52	1.34	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	664.95	655.32	33.09	0.05
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	227.19	227.19	2.52	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	96.67	96.67	26.27	0.27
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	172.47	165.96	13.50	0.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	153.12	153.25	30.73	0.20
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	281.03	287.26	38.44	0.14
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	994.12	967.56	55.61	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	695.83	711.51	34.48	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	331.89	327.37	12.39	0.04
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	426.26	426.26	53.25	0.12
	Gene expression data from Micro-Tom root	root	3	3	321.03	309.76	23.20	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	148.34	0.002	P
	GSM480170 extract 1	124.094	0.001	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	221.011	2e-4	P
	GSM480212 extract 1	226.37	2e-4	P
	GSM480213 extract 1	299.777	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	544.749	2e-4	P
	GSM480186 extract 1	471.639	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	779.302	2e-4	P
	GSM480188 extract 1	529.668	2e-4	P
	GSM480189 extract 1	672.52	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	496.41	2e-4	P
	GSM480226 extract 1	607.536	2e-4	P
	GSM480227 extract 1	698.608	2e-4	P
	GSM480225 extract 1	402.299	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	187.059	2e-4	P
	GSM480206 extract 1	187.688	2e-4	P
	GSM480208 extract 1	258.696	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	565.336	2e-4	P
	GSM480210 extract 1	567.923	2e-4	P
	GSM480209 extract 1	579.542	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	223.371	2e-4	P
	GSM480220 extract 1	245.735	2e-4	P
	GSM480218 extract 1	202.274	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	366.141	2e-4	P
	GSM480222 extract 1	399.86	2e-4	P
	GSM480221 extract 1	380.352	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	323.682	2e-4	P
	GSM480190 extract 1	327.553	2e-4	P
	GSM480191 extract 1	355.024	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	671.067	2e-4	P
	GSM480195 extract 1	660.844	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	584.338	2e-4	P
	GSM480198 extract 1	516.7	2e-4	P
	GSM480199 extract 1	694.585	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	577.568	2e-4	P
	GSM480194 extract 1	579.467	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	712.388	2e-4	P
	GSM480230 extract 1	636.759	2e-4	P
	GSM480231 extract 1	650.137	2e-4	P
	GSM480229 extract 1	660.504	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	228.969	7e-4	P
	GSM480169 extract 1	225.408	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	115.248	7e-4	P
	GSM480173 extract 1	78.0898	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	165.96	7e-4	P
	GSM480176 extract 1	163.468	7e-4	P
	GSM480174 extract 1	187.99	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	122.331	2e-4	P
	GSM480177 extract 1	153.253	7e-4	P
	GSM480178 extract 1	183.79	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	287.262	2e-4	P
	GSM480201 extract 1	315.975	7e-4	P
	GSM480202 extract 1	239.853	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	956.772	2e-4	P
	GSM480205 extract 1	1058.03	2e-4	P
	GSM480203 extract 1	967.555	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	719.68	2e-4	P
	GSM480216 extract 1	656.296	2e-4	P
	GSM480217 extract 1	711.508	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	322.399	7e-4	P
	GSM480181 extract 1	327.369	7e-4	P
	GSM480182 extract 1	345.901	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	463.919	2e-4	P
	GSM480184 extract 1	388.61	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	305.624	2e-4	P
	GSM480165 extract 1	347.708	2e-4	P
	GSM480166 extract 1	309.757	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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