Publications

solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.
Tecle IY, Menda N, Buels RM, van der Knaap E, Mueller LA. BMC Bioinformatics. 2010 Oct 21;11:525.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.
Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA. Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. Epub 2010 Oct 8.
A dynamic interface for capsaicinoid systems biology.
Mazourek M, Pujar A, Borovsky Y, Paran I, Mueller L, Jahn MM. Plant Physiol. 2009 Jun 24
A Snapshot of the Emerging Tomato Genome Sequence.
Mueller LA. et al. Plant Genome. 2009;2(1):78-92.
A community-based annotation framework for linking solanaceae genomes with phenomes.
Menda N, Buels RM, Tecle I, Mueller LA. Plant Physiol. 2008 Aug;147(4):1788-99.
Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato.
Datema E, Mueller LA, Buels R, Giovannoni JJ, Visser RG, Stiekema WJ, van Ham RC. BMC Plant Biol. 2008 Apr 11;8:34.
The SGN comparative map viewer
Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD. Bioinformatics. 2008 Feb 1;24(3):422-3.
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade.
Wu F, Mueller LA, Crouzillat D, Pétiard V, Tanksley SD. Genetics. 2006 Nov;174(3):1407-20.
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.
Lin C, Mueller LA, McCarthy J, Crouzillat D, Pétiard V, Tanksley SD. Theor Appl Genet. 2005 Nov 5;:1-17.
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD. Plant Physiol. 2005 Jul;138(3):1310-7.