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Tomato locus ripening inhibitor
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Locus | Solyc05g012020 |
Locus name | ripening inhibitor |
Symbol | rin |
Gene activity | MADS-BOX transcription factor |
Description | encodes a genetic regulatory component necessary to trigger climacteric respiration and ripening-related ethylene biosynthesis. It regulates ripening. |
Chromosome | 5 |
Arm | short |
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ripening inhibitor is a TGRC gene
ripening inhibitor is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch05, position: 5230699
Please cite Razifard et al.
Registry name: | None | [Associate registry name] |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc05g012020.2 SL2.50ch05:5230962..5225203 (sequence from reverse strand)
TCATGATATATAGTAAAACAAAAAAGTCTTTATTCTCTTTTCTTCTTGACTAGGGAACCATTAGATTTTAAAGACATTAA
ATCTATTACCCTTACCCTAAGAATAAGAAGATGTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATA
ATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAATAATATTATTTTACATTTTT
TTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCA
AAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTC
TAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGGTATGTATGTATTTTTATTGACATAATTTTGAAGATTAGAG
ATGTCATATTGTTTGAGGTACTATTTGTTTTTGTATATATATATATATATATTCACTATCTGGTACAAAGGTTTGATATT
TCACTGTCTGATGAAAAGGTTTGATTTTTATTTTAATGTTATTTTATGAAAAAGATTTTTATTTTGAAAATTAGAAACGT
CATATCGTTTGAGGGGTACTATATTTTTTTTTATATGTTTTACTCTTTGCTAAGAAGGTTTGATCTTTGATTATTGCTAT
ATAAAGAAAAAGAGCTTGATTTCTTGAAGATTAGAAATGTCATATCGCTTAAGGGGTACTATTTTGTTTTTTTATATGTT
TTATTGTTTGTTAAAGAAAATTTGATCTTTGATTAATGATGTATTAAGAATTAAAAAGATCTTGATTTCTTAAAGATTAG
AAATGTCATATCGTTTGAGGGGTATTATGTCTTTTGTATATATATGGTATATCGTATGCTAAGAAGGTTTGATCTTTGAA
TATACTATATTATGAAAAAGATCTTGATTTCTTGAAGAGTAGAAATGTAATATCGATAGAGGGGTATCTGTGATCGCATA
TGTTGATCTTTAATTGATGTTATTTTATGAAAAATGATTTTCATTTTTTAAAGATTATACTCTGGTAATAAAGAAGATAT
GATCTTTAAAAGAATTTTGATTTCTTGAAAATTAGAGATATTATATCGATCGAAGGGTATAACAATCGTATTTGTTCTAC
TGTCTGCTAAAAAGGTTTGATCTAAGATGGATGCTATTTTATGAAAAATAAAAAATATTTAAAAATTTGAATCGTCACTA
ATATTATATTTATATTTTTAATCTGTGTATCGAGGATTGTTTCTTATCGTATATATGATCAAAACTCAATTTTTTTCAAA
GATTAGAGAGGTAAGTAGTACTATTTTTCTATATTTAGACTTTTGATTGAAGGATGTTGCTTATCATATTTATGGTAGGA
GAAAAAAAAATGATTTTGGACTAAGTTTTCCATATACTTTGACTTTATCATATGTTGAAATTTTTGTCAACAAAGAAAAT
ATTTTATTGGAACAAACATATGATCTAGGTTTTTAAAGTAGATTATTTCAAATTAATTATACCATTACAAATGAAGAATC
TTGATGAATTTATATATTTAAAGATAAAAGAAATAATTGTTATAATTTTTATAAGGAATAATATATATGTTAGTTGAGGG
GAGTCTTTAACTTTGGTGTTGATTTGATGTGCACCTTCATATTTCTCCATTTTATGAAACTTTATTTTTCTTAAAGTACA
GACATATAATAAAGACAAGCGTGACAATTTTTCATATAAAGCTGAATAAATTCTTCATACTACATTATAAGCAAATAGAA
TATATCTAGATTTGATCATCATCACTAGTATTGAAATAAATCACTTCTTTAGTTTACTTTTTAACGATAATAATCGTGAT
GAAATAGATAAATTTATTCATTCATAACAAAAATTTTCAAATTCGAATTTTGAGGTGATAATTTATGTGGAATATTCTAA
AAAAAATCAGGATTAAATTTATATGAATATCTCAAAATTATTTATCTTATATGAAAATGGTGAATTATAATTACCATGAC
CAAAGATAAATAAAAAAGGAAAAAATAACTAATATTATCTTTTTCAAACTTTCACAAAAGTAATAGGGATCAAATCAACT
AGTAGTAGTACACTTTATCATGCATAAGAAATAAATTGTTCCAAATTTATACTTATACAATATTTTGTCATGGTATCTTG
TAGTCTCCTACACTATTATTATCATTATAAAAAAGTAATACAAATTTCTTGATTTTCCATCCGGTGCTCCGTTTTGATTT
TTAGAGTATCGTTTAATTTAAATTGTATCACGTAAAAGAAAAGCACTTTCAATATCGTTATAATTTTTTTTTGTTTTCAG
AGATTAAATTCAAGTCTTTTGATTCAAGGAAATGATTATGAGATCCTTTGTGTTAGACATGTGAATTTAGGAAGTAAATG
ATTATTAGACAACACCATGCATAATTTATGAGCTTATATTTAGCTTTTAAATATAAGTTATTTTTAGAAAAAACTTAGAC
AACTAATTTGCAACGATAGAAATACAATTTTAGAGAAATAAAATCATCATAAAAATATAGGAAAATTAGGAAAATTAAAC
ATCAATTAATGAAAAAAAAAGGAAGTTAAATTTGTGGGCTCGAGGGAGTAATTAAAGTAGATTAAAAGTTCTTTTTCTGA
ATTTTACCTGCCCTTTGTTATTACTTTTCCTTTTTTTTTTTTACTTTCCATAGTTAATTTCCTTTCGTTTATTTTTTTCA
AAAACTTTTACAGTAAAACAAGTCAATAAATATTTATTTCGCTATAAATCATTTCATAAAGATGAAAATACTAGTACTAG
TAATAAGGAATACTAAAATGTGTGGATTTCCGGGGAAGTTCCAACGACACGCCATTAAAAGTTATTTTCAACGAAAATAT
AATCAAAACATTTTTATTTCCATCGGAAGCTCACATATTTTTTTCGTGAATACTCTTCTTTACATTTTAATTTGTTTTTT
TTATATCAGTTGAGCACTTCGTTTTACAAAATGATCATCTAGACAACTTTGAAAATTTTTGTGTCACATAAGCATCAGGT
GTCTAGGAGATACAGTAAAAACGAGTTGGAATACTTAGTTGTCAAATTGAGATCAGGTTAAAATGTTTACATCTGCACTT
TCAAATTATATTAAAACGTATAGTTGTCAGCTGATATCAAATTATATTAAAACGTATAGTTGTCAGCTGATATCAAATTT
AACGTTTAATTATTCTATTACTTGTGTTTCTAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATGGTACAC
TTGAAGGAACCCAAACTTCATCAGATTCACAGGTTTTATTTGTATTTCTTCCTCAATATTCAAGCATGCAAATTACTCAA
AAGGTTTTCTTAGAAAACATCAAATAGTTCAATTTTTTAAACCTAAATTAGTTAGTAAAATTAAGAGTTAATGGATAAGA
GCACATTTAAATTATCACTTTTTGTGAGTTATCATATAAACCTTAACTATTCATTGTTTTCTTTATCTGTCTAAACTATC
ACTTAATTTGTATTAAACACACCTCAATGCTGAGTTGGTAAAATATTTATTCTTATTCGACATATGTGTGTAGGCCAACT
CAATATTGATGTGTTTTTAAATATAAACTAAGTGAAAGTTAGAAATATGAAACTTGTGAAAATGTAATAATTTAAGCATA
TATAAATAGAAAAATAGATAGCTGATATATGAAACTCACGAAATTACGACAATTTATGTATTTTTCTTTTAATTAACTCT
ACCATTAAAGCTAATAATATTGATGGCTAATTTTGATGAAATTGATTTTCTTGTTGTAAAAAACAGAACAACTACCAAGA
GTATTTGAAGCTTAAAACAAGAGTGGAAATGTTACAACAGTCTCAAAGGTGAGAAAAAAAATTACTTATTTAGACCAAGA
TTATTAGATGTAATTTTCAACTCCGAATGCATTAAGTTGTCGCTATTTCACATGGATTGGACCACATAAGATTTGTTGTT
GCCTAGAGTTACTATTTCAACGACTTGAATGTGTGACCTCCTGATCACACGATAACAGATCCAGACTATTCATTCTTTAT
AATTTATTTTGAAATAACTTTTTCATATTTTTAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTG
GAACAGCTTGAACGTCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGGTACTACTTTTATTTTACAAATAATG
ACAAATAATTTAAGATAATTATTTTTTAAAATTACGAAGAAATAATTTGAGACAGAGAGAGTATCTAATAAGGTCTTAAT
TGATGAACTACTTTTTTTAAAAAACTTGTTTTCAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAAAGGTA
CATTATATATAGAAATTAATTAAGATGACATTTAGTTATTTTAATTTTCTCAAATTATATTGGAAATATAATATGTTTTT
TTTACTTCTTGTACAGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGGTAACAATAATAACTTAGACTA
TAGTTTTGGCTTAATTTTGATTTACAAATTACTTTGAGATCGATCACTCGACTTTATCTACTATAACAGTAAAGTCAAAT
TATAATTTCTTGTCTCACTAAGGTAACTTCATTATCATATATAGTTGTAAAGTCACAAAATTATTTTTGTTTACTTACGT
TACAATAATTGAACTGACTATATTGAATTGTTATCATAAATAAAGTTCAGTAATCGATCATATTTTTTTTTAACAATAAC
TTTTCTATGGAATTTTGATAATTTTAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGGCATTGTGGTGAGCAAAG
TGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAATAATACATTGCCTATAA
GGTAATATTGAAAATTTCTAGCTTTTCATGAATTTTTTTTTTAATAAATTTATACATATAAGGCACAATCAATACACAAC
AACAATATTAACGTATCAGTGTAACCTCACAAGTAGGGCCTGAAAAGAGTGGTATATGTATCAGCATTATCTTTAGTTAA
TTCGTGAAGATAGAAAAGTTGTTTATAATTGACCTCGACTCTAGTAAATCATATCAACATAATACACACAAATTCAATAT
CTAATCAATCAAACGTGTAGTATATTATGTACACACATTTTTAAAAAATATCTTATTATAAACATGCATATATTTTGAAT
TAAGAAGCAATTATTACGTGCTCTGAAATCACTTATGACTTTATTAGTCTACTTGTTTGAGACTGAGACACGGTTATATA
TATTTGTTGATTTAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAGTTG
TACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTATTAA
AAAAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAACACT
TTGGATTATATATAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACACTATATTTTTGAATTAC
TCATGATATATAGTAAAACAAAAAAGTCTTTATTCTCTTTTCTTCTTGACTAGGGAACCATTAGATTTTAAAGACATTAA
ATCTATTACCCTTACCCTAAGAATAAGAAGATGTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATA
ATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAATAATATTATTTTACATTTTT
TTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCA
AAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTC
TAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGGTATGTATGTATTTTTATTGACATAATTTTGAAGATTAGAG
ATGTCATATTGTTTGAGGTACTATTTGTTTTTGTATATATATATATATATATTCACTATCTGGTACAAAGGTTTGATATT
TCACTGTCTGATGAAAAGGTTTGATTTTTATTTTAATGTTATTTTATGAAAAAGATTTTTATTTTGAAAATTAGAAACGT
CATATCGTTTGAGGGGTACTATATTTTTTTTTATATGTTTTACTCTTTGCTAAGAAGGTTTGATCTTTGATTATTGCTAT
ATAAAGAAAAAGAGCTTGATTTCTTGAAGATTAGAAATGTCATATCGCTTAAGGGGTACTATTTTGTTTTTTTATATGTT
TTATTGTTTGTTAAAGAAAATTTGATCTTTGATTAATGATGTATTAAGAATTAAAAAGATCTTGATTTCTTAAAGATTAG
AAATGTCATATCGTTTGAGGGGTATTATGTCTTTTGTATATATATGGTATATCGTATGCTAAGAAGGTTTGATCTTTGAA
TATACTATATTATGAAAAAGATCTTGATTTCTTGAAGAGTAGAAATGTAATATCGATAGAGGGGTATCTGTGATCGCATA
TGTTGATCTTTAATTGATGTTATTTTATGAAAAATGATTTTCATTTTTTAAAGATTATACTCTGGTAATAAAGAAGATAT
GATCTTTAAAAGAATTTTGATTTCTTGAAAATTAGAGATATTATATCGATCGAAGGGTATAACAATCGTATTTGTTCTAC
TGTCTGCTAAAAAGGTTTGATCTAAGATGGATGCTATTTTATGAAAAATAAAAAATATTTAAAAATTTGAATCGTCACTA
ATATTATATTTATATTTTTAATCTGTGTATCGAGGATTGTTTCTTATCGTATATATGATCAAAACTCAATTTTTTTCAAA
GATTAGAGAGGTAAGTAGTACTATTTTTCTATATTTAGACTTTTGATTGAAGGATGTTGCTTATCATATTTATGGTAGGA
GAAAAAAAAATGATTTTGGACTAAGTTTTCCATATACTTTGACTTTATCATATGTTGAAATTTTTGTCAACAAAGAAAAT
ATTTTATTGGAACAAACATATGATCTAGGTTTTTAAAGTAGATTATTTCAAATTAATTATACCATTACAAATGAAGAATC
TTGATGAATTTATATATTTAAAGATAAAAGAAATAATTGTTATAATTTTTATAAGGAATAATATATATGTTAGTTGAGGG
GAGTCTTTAACTTTGGTGTTGATTTGATGTGCACCTTCATATTTCTCCATTTTATGAAACTTTATTTTTCTTAAAGTACA
GACATATAATAAAGACAAGCGTGACAATTTTTCATATAAAGCTGAATAAATTCTTCATACTACATTATAAGCAAATAGAA
TATATCTAGATTTGATCATCATCACTAGTATTGAAATAAATCACTTCTTTAGTTTACTTTTTAACGATAATAATCGTGAT
GAAATAGATAAATTTATTCATTCATAACAAAAATTTTCAAATTCGAATTTTGAGGTGATAATTTATGTGGAATATTCTAA
AAAAAATCAGGATTAAATTTATATGAATATCTCAAAATTATTTATCTTATATGAAAATGGTGAATTATAATTACCATGAC
CAAAGATAAATAAAAAAGGAAAAAATAACTAATATTATCTTTTTCAAACTTTCACAAAAGTAATAGGGATCAAATCAACT
AGTAGTAGTACACTTTATCATGCATAAGAAATAAATTGTTCCAAATTTATACTTATACAATATTTTGTCATGGTATCTTG
TAGTCTCCTACACTATTATTATCATTATAAAAAAGTAATACAAATTTCTTGATTTTCCATCCGGTGCTCCGTTTTGATTT
TTAGAGTATCGTTTAATTTAAATTGTATCACGTAAAAGAAAAGCACTTTCAATATCGTTATAATTTTTTTTTGTTTTCAG
AGATTAAATTCAAGTCTTTTGATTCAAGGAAATGATTATGAGATCCTTTGTGTTAGACATGTGAATTTAGGAAGTAAATG
ATTATTAGACAACACCATGCATAATTTATGAGCTTATATTTAGCTTTTAAATATAAGTTATTTTTAGAAAAAACTTAGAC
AACTAATTTGCAACGATAGAAATACAATTTTAGAGAAATAAAATCATCATAAAAATATAGGAAAATTAGGAAAATTAAAC
ATCAATTAATGAAAAAAAAAGGAAGTTAAATTTGTGGGCTCGAGGGAGTAATTAAAGTAGATTAAAAGTTCTTTTTCTGA
ATTTTACCTGCCCTTTGTTATTACTTTTCCTTTTTTTTTTTTACTTTCCATAGTTAATTTCCTTTCGTTTATTTTTTTCA
AAAACTTTTACAGTAAAACAAGTCAATAAATATTTATTTCGCTATAAATCATTTCATAAAGATGAAAATACTAGTACTAG
TAATAAGGAATACTAAAATGTGTGGATTTCCGGGGAAGTTCCAACGACACGCCATTAAAAGTTATTTTCAACGAAAATAT
AATCAAAACATTTTTATTTCCATCGGAAGCTCACATATTTTTTTCGTGAATACTCTTCTTTACATTTTAATTTGTTTTTT
TTATATCAGTTGAGCACTTCGTTTTACAAAATGATCATCTAGACAACTTTGAAAATTTTTGTGTCACATAAGCATCAGGT
GTCTAGGAGATACAGTAAAAACGAGTTGGAATACTTAGTTGTCAAATTGAGATCAGGTTAAAATGTTTACATCTGCACTT
TCAAATTATATTAAAACGTATAGTTGTCAGCTGATATCAAATTATATTAAAACGTATAGTTGTCAGCTGATATCAAATTT
AACGTTTAATTATTCTATTACTTGTGTTTCTAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATGGTACAC
TTGAAGGAACCCAAACTTCATCAGATTCACAGGTTTTATTTGTATTTCTTCCTCAATATTCAAGCATGCAAATTACTCAA
AAGGTTTTCTTAGAAAACATCAAATAGTTCAATTTTTTAAACCTAAATTAGTTAGTAAAATTAAGAGTTAATGGATAAGA
GCACATTTAAATTATCACTTTTTGTGAGTTATCATATAAACCTTAACTATTCATTGTTTTCTTTATCTGTCTAAACTATC
ACTTAATTTGTATTAAACACACCTCAATGCTGAGTTGGTAAAATATTTATTCTTATTCGACATATGTGTGTAGGCCAACT
CAATATTGATGTGTTTTTAAATATAAACTAAGTGAAAGTTAGAAATATGAAACTTGTGAAAATGTAATAATTTAAGCATA
TATAAATAGAAAAATAGATAGCTGATATATGAAACTCACGAAATTACGACAATTTATGTATTTTTCTTTTAATTAACTCT
ACCATTAAAGCTAATAATATTGATGGCTAATTTTGATGAAATTGATTTTCTTGTTGTAAAAAACAGAACAACTACCAAGA
GTATTTGAAGCTTAAAACAAGAGTGGAAATGTTACAACAGTCTCAAAGGTGAGAAAAAAAATTACTTATTTAGACCAAGA
TTATTAGATGTAATTTTCAACTCCGAATGCATTAAGTTGTCGCTATTTCACATGGATTGGACCACATAAGATTTGTTGTT
GCCTAGAGTTACTATTTCAACGACTTGAATGTGTGACCTCCTGATCACACGATAACAGATCCAGACTATTCATTCTTTAT
AATTTATTTTGAAATAACTTTTTCATATTTTTAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTG
GAACAGCTTGAACGTCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGGTACTACTTTTATTTTACAAATAATG
ACAAATAATTTAAGATAATTATTTTTTAAAATTACGAAGAAATAATTTGAGACAGAGAGAGTATCTAATAAGGTCTTAAT
TGATGAACTACTTTTTTTAAAAAACTTGTTTTCAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAAAGGTA
CATTATATATAGAAATTAATTAAGATGACATTTAGTTATTTTAATTTTCTCAAATTATATTGGAAATATAATATGTTTTT
TTTACTTCTTGTACAGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGGTAACAATAATAACTTAGACTA
TAGTTTTGGCTTAATTTTGATTTACAAATTACTTTGAGATCGATCACTCGACTTTATCTACTATAACAGTAAAGTCAAAT
TATAATTTCTTGTCTCACTAAGGTAACTTCATTATCATATATAGTTGTAAAGTCACAAAATTATTTTTGTTTACTTACGT
TACAATAATTGAACTGACTATATTGAATTGTTATCATAAATAAAGTTCAGTAATCGATCATATTTTTTTTTAACAATAAC
TTTTCTATGGAATTTTGATAATTTTAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGGCATTGTGGTGAGCAAAG
TGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAATAATACATTGCCTATAA
GGTAATATTGAAAATTTCTAGCTTTTCATGAATTTTTTTTTTAATAAATTTATACATATAAGGCACAATCAATACACAAC
AACAATATTAACGTATCAGTGTAACCTCACAAGTAGGGCCTGAAAAGAGTGGTATATGTATCAGCATTATCTTTAGTTAA
TTCGTGAAGATAGAAAAGTTGTTTATAATTGACCTCGACTCTAGTAAATCATATCAACATAATACACACAAATTCAATAT
CTAATCAATCAAACGTGTAGTATATTATGTACACACATTTTTAAAAAATATCTTATTATAAACATGCATATATTTTGAAT
TAAGAAGCAATTATTACGTGCTCTGAAATCACTTATGACTTTATTAGTCTACTTGTTTGAGACTGAGACACGGTTATATA
TATTTGTTGATTTAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAGTTG
TACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTATTAA
AAAAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAACACT
TTGGATTATATATAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACACTATATTTTTGAATTAC
Download sequence region |
Get flanking sequences on SL2.50ch05
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![]() ![]() |
![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc05g012020.2.1 Ripening Inhibitor (RIN) MADS-box transcription factor MADS-MC (AHRD V1 *-** Q8S4L5_SOLLC); contains Interpro domain(s) IPR002487 Transcription factor, K-box
TCATGATATATAGTAAAACAAAAAAGTCTTTATTCTCTTTTCTTCTTGACTAGGGAACCATTAGATTTTAAAGACATTAA
ATCTATTACCCTTACCCTAAGAATAAGAAGATGTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATA
ATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAATAATATTATTTTACATTTTT
TTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCA
AAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTC
TAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATG
GTACACTTGAAGGAACCCAAACTTCATCAGATTCACAGAACAACTACCAAGAGTATTTGAAGCTTAAAACAAGAGTGGAA
ATGTTACAACAGTCTCAAAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTGGAACAGCTTGAACG
TCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAA
AGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGG
CATTGTGGTGAGCAAAGTGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAA
TAATACATTGCCTATAAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAG
TTGTACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTAT
TAAAAAAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAAC
ACTTTGGATTATATATAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACACTATATTTTTGAAT
TAC
TCATGATATATAGTAAAACAAAAAAGTCTTTATTCTCTTTTCTTCTTGACTAGGGAACCATTAGATTTTAAAGACATTAA
ATCTATTACCCTTACCCTAAGAATAAGAAGATGTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATA
ATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAATAATATTATTTTACATTTTT
TTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCA
AAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTC
TAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATG
GTACACTTGAAGGAACCCAAACTTCATCAGATTCACAGAACAACTACCAAGAGTATTTGAAGCTTAAAACAAGAGTGGAA
ATGTTACAACAGTCTCAAAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTGGAACAGCTTGAACG
TCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAA
AGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGG
CATTGTGGTGAGCAAAGTGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAA
TAATACATTGCCTATAAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAG
TTGTACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTAT
TAAAAAAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAAC
ACTTTGGATTATATATAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACACTATATTTTTGAAT
TAC
![]() ![]() | translated polypeptide sequence |
>Solyc05g012020.2.1 Ripening Inhibitor (RIN) MADS-box transcription factor MADS-MC (AHRD V1 *-** Q8S4L5_SOLLC); contains Interpro domain(s) IPR002487 Transcription factor, K-box
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEIALIIFSSRGKLYEFCSNSSMSKTLERYHRYNYGTLEG
TQTSSDSQNNYQEYLKLKTRVEMLQQSQRHLLGEDLGQLGTKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSL
TEMNKSLRIKLEELGVTFQTSWHCGEQSVQYRHEQPSHHEGFFQHVNCNNTLPISYGYDNVQPENAAPSTHDATGVVPGW
ML*
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEIALIIFSSRGKLYEFCSNSSMSKTLERYHRYNYGTLEG
TQTSSDSQNNYQEYLKLKTRVEMLQQSQRHLLGEDLGQLGTKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSL
TEMNKSLRIKLEELGVTFQTSWHCGEQSVQYRHEQPSHHEGFFQHVNCNNTLPISYGYDNVQPENAAPSTHDATGVVPGW
ML*
![]() ![]() |
![]() ![]() | [Associate new unigene] |
Unigene ID:
SGN-U578471 Tomato 200607 -- build 2 -- 24 members [Remove] [Blast]
SGN-U580017 Tomato 200607 -- build 2 -- 2 members [Remove] [Blast]
SGN-U590940 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
SGN-U593346 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
SGN-U580017 Tomato 200607 -- build 2 -- 2 members [Remove] [Blast]
SGN-U590940 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
SGN-U593346 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
![]() ![]() | [Associate new genbank sequence] |
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus.
Science (New York, N.Y.) (2002)
Show / hide abstract
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Tomato plants harboring the ripening-inhibitor (rin) mutation yield fruits that fail to ripen. Additionally, rin plants display enlarged sepals and loss of inflorescence determinacy. Positional cloning of the rin locus revealed two tandem MADS-box genes (LeMADS-RIN and LeMADS-MC), whose expression patterns suggested roles in fruit ripening and sepal development, respectively. The rin mutation alters expression of both genes. Gene repression and mutant complementation demonstrate that LeMADS-RIN regulates ripening, whereas LeMADS-MC affects sepal development and inflorescence determinacy. LeMADS-RIN demonstrates an agriculturally important function of plant MADS-box genes and provides molecular insight into nonhormonal (developmental) regulation of ripening.
Vrebalov, J. Ruezinsky, D. Padmanabhan, V. White, R. Medrano, D. Drake, R. Schuch, W. Giovannoni, J.
Science (New York, N.Y.).
2002.
296(5566).
343-6.
Interaction study of MADS-domain proteins in tomato.
Journal of experimental botany (2008)
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MADS-domain proteins are important transcription factors involved in many biological processes of plants. Interactions between MADS-domain proteins are essential for their functions. In tomato (Solanum lycopersicum), the number of MIKC(c)-type MADS-domain proteins identified has totalled 36, but a large-scale interaction assay is lacking. In this study, 22 tomato MADS-domain proteins were selected from six functionally important subfamilies of the MADS-box gene family, to create the first large-scale tomato protein interaction network. Compared with Arabidopsis and petunia (Petunia hybrida), protein interaction patterns in tomato displayed both conservation and divergence. The majority of proteins that can be identified as putative orthologues exhibited conserved interaction patterns, and modifications were mostly found in genes underlining traits unique to tomato. JOINTLESS and RIN, characterized for their roles in abscission zone development and fruit ripening, respectively, showed enlarged interaction networks in comparison with their Arabidopsis and petunia counterparts. Novel interactions were also found for members of the expanded subfamilies, such as those represented by AP1/FUL and AP3/PI MADS-domain proteins. In search for higher order complexes, TM5 was found to be the preferred bridge among the five SEP-like proteins. Additionally, 16 proteins with the MADS-domain removed were used to assess the role of the MADS-domain in protein-protein interactions. The current work provides important knowledge for further functional and evolutionary study of the MADS-box genes in tomato.
Leseberg, CH. Eissler, CL. Wang, X. Johns, MA. Duvall, MR. Mao, L.
Journal of experimental botany.
2008.
59(8).
2253-65.
A large-scale identification of direct targets of the tomato MADS box transcription factor RIPENING INHIBITOR reveals the regulation of fruit ripening.
The Plant cell (2014)
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The fruit ripening developmental program is specific to plants bearing fleshy fruits and dramatically changes fruit characteristics, including color, aroma, and texture. The tomato (Solanum lycopersicum) MADS box transcription factor RIPENING INHIBITOR (RIN), one of the earliest acting ripening regulators, is required for both ethylene-dependent and -independent ripening regulatory pathways. Recent studies have identified two dozen direct RIN targets, but many more RIN targets remain to be identified. Here, we report the large-scale identification of direct RIN targets by chromatin immunoprecipitation coupled with DNA microarray analysis (ChIP-chip) targeting the predicted promoters of tomato genes. Our combined ChIP-chip and transcriptome analysis identified 241 direct RIN target genes that contain a RIN binding site and exhibit RIN-dependent positive or negative regulation during fruit ripening, suggesting that RIN has both activator and repressor roles. Examination of the predicted functions of RIN targets revealed that RIN participates in the regulation of lycopene accumulation, ethylene production, chlorophyll degradation, and many other physiological processes. Analysis of the effect of ethylene using 1-methylcyclopropene revealed that the positively regulated subset of RIN targets includes ethylene-sensitive and -insensitive transcription factors. Intriguingly, ethylene is involved in the upregulation of RIN expression during ripening. These results suggest that tomato fruit ripening is regulated by the interaction between RIN and ethylene signaling.
Fujisawa, M. Nakano, T. Shima, Y. Ito, Y.
The Plant cell.
2014.
25(2).
371-86.
Tomato FRUITFULL homologs regulate fruit ripening via ethylene biosynthesis.
Bioscience, biotechnology, and biochemistry (2014)
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Certain MADS-box transcription factors play central roles in regulating fruit ripening. RIPENING INHIBITOR (RIN), a tomato MADS-domain protein, acts as a global regulator of ripening, affecting the climacteric rise of ethylene, pigmentation changes, and fruit softening. Previously, we showed that two MADS-domain proteins, the FRUITFULL homologs FUL1 and FUL2, form complexes with RIN. Here, we characterized the FUL1/FUL2 loss-of-function phenotype in co-suppressed plants. The transgenic plants produced ripening-defective fruits accumulating little or no lycopene. Unlike a previous study on FUL1/FUL2 suppressed tomatoes, our transgenic fruits showed very low levels of ethylene production, and this was associated with suppression of the genes for 1-aminocyclopropane-1-carboxylic acid synthase, a rate-limiting enzyme in ethylene synthesis. FUL1/FUL2 suppression also caused the fruit to soften in a manner independent of ripening, possibly due to reduced cuticle thickness in the peel of the suppressed tomatoes.
Shima, Y. Fujisawa, M. Kitagawa, M. Nakano, T. Kimbara, J. Nakamura, N. Shiina, T. Sugiyama, J. Nakamura, T. Kasumi, T. Ito, Y.
Bioscience, biotechnology, and biochemistry.
2014.
78(2).
231-7.
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