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Tomato locus 1-aminocyclopropane-1-carboxylate synthase 3
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Locus | Solyc02g091990 |
Locus name | 1-aminocyclopropane-1-carboxylate synthase 3 |
Symbol | acs3 |
Gene activity | 1-aminocyclopropane-1-carboxylate synthase |
Description | |
Chromosome | 2 |
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Registry name: | None | [Associate registry name] |
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Accession name:
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Alleles (0) | None | [Add new Allele] |
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Associated loci - graphical view | None |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc02g091990.2 SL2.50ch02:53210555..53208754 (sequence from reverse strand)
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGA
GAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGGTAATTTGAAAAA
AATACTTGAAACAGTTCTGTTTTTTTAAGAATCCCCATCTTCGATTGTCGGCTTTCACATTCTTTGCACTAACAATAATT
TTATTTTATTTTCGTTACGCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTA
AGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGTACGT
ATTTTTAATATATTGTTCACATGTATTATGAATACAAAAATATATTAAATATTACGTATGTGTGACATCATTTATCTTAC
GTTGTTATGTTTATTTTTATAATGCAGGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTC
CAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTT
TTCTCCTTCCTACCCCATACTATCCTGGGTACGTTCTCATCATCTATTTGATCGTAAAATTTTAAGTTAAAATTATTTTT
TTTTCTTTACTGATGTTCTTATTGCATTATGTAATACAGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTG
TACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAG
CGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGA
ACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCAC
CAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTT
TACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGC
GGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAAT
TCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCT
GGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGA
CGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCG
AACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTT
GTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTC
CAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACA
AATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGA
GAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGGTAATTTGAAAAA
AATACTTGAAACAGTTCTGTTTTTTTAAGAATCCCCATCTTCGATTGTCGGCTTTCACATTCTTTGCACTAACAATAATT
TTATTTTATTTTCGTTACGCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTA
AGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGTACGT
ATTTTTAATATATTGTTCACATGTATTATGAATACAAAAATATATTAAATATTACGTATGTGTGACATCATTTATCTTAC
GTTGTTATGTTTATTTTTATAATGCAGGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTC
CAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTT
TTCTCCTTCCTACCCCATACTATCCTGGGTACGTTCTCATCATCTATTTGATCGTAAAATTTTAAGTTAAAATTATTTTT
TTTTCTTTACTGATGTTCTTATTGCATTATGTAATACAGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTG
TACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAG
CGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGA
ACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCAC
CAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTT
TACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGC
GGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAAT
TCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCT
GGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGA
CGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCG
AACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTT
GTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTC
CAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACA
AATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
Download sequence region |
Get flanking sequences on SL2.50ch02
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![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc02g091990.2.1 1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGA
GAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGCTTTCATTTGATT
TATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCT
CTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGT
AAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACC
AAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATT
GTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAA
GCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTG
AACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCA
CCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGT
TTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCG
CGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAA
TTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGC
TGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTG
ACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACC
GAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTT
TGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCT
CCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCAC
AAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGA
GAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGCTTTCATTTGATT
TATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCT
CTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGT
AAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACC
AAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATT
GTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAA
GCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTG
AACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCA
CCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGT
TTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCG
CGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAA
TTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGC
TGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTG
ACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACC
GAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTT
TGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCT
CCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCAC
AAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
![]() ![]() | translated polypeptide sequence |
>Solyc02g091990.2.1 1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQNPDAAGFKRNGESIFRELA
LFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATSANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEI
VPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNS
PGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKK
FTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCT
EPGWFRVCFANMSEDTLDLAMRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFNDRQRER*
MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQNPDAAGFKRNGESIFRELA
LFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATSANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEI
VPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNS
PGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKK
FTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCT
EPGWFRVCFANMSEDTLDLAMRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFNDRQRER*
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![]() ![]() | [Associate new unigene] |
Unigene ID:
![]() ![]() | [Associate new genbank sequence] |
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
Differential accumulation of transcripts for four tomato 1-aminocyclopropane-1-carboxylate synthase homologs under various conditions.
Proceedings of the National Academy of Sciences of the United States of America (1992)
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Degenerate oligonucleotide primers corresponding to conserved regions flanking the active-site domain of 1-aminocyclopropane-1-carboxylate (ACC) synthase (EC 4.4.1.14) were used for the polymerase chain reaction (PCR) to amplify DNA fragments from mRNA isolated from tomato fruit and tomato suspension cell culture. Antibodies raised against two conserved peptide sequences (TNPSNPLGTT and SLSKDLGLPGFRVG) were used to screen for positive colonies, after the PCR products were cloned into a Bluescript plasmid and expressed in Escherichia coli. Four distinct cDNA fragments encoding ACC synthase homologs were isolated. While pBTAS1 and pBTAS4 were obtained from fruit mRNA, cell culture mRNA yielded three sequences, pBTAS1, pBTAS2, and pBTAS3. Sequencing of these gene fragments revealed that pBTAS1 and pBTAS4 were identical to those full-length sequences previously reported by Van Der Straeten et al. [Van Der Straeten, D., Van Wiemeersch, L., Goodman, H. & Van Montague, M. (1990) Proc. Natl. Acad. Sci. USA 87, 4859-4863] and Olson et al. [Olson, D. C., White, J. A., Edelman, J., Harkin, R. N. & Kende, H. (1991) Proc. Natl. Acad. Sci. USA 88, 5340-5344] from tomato fruit, whereas pBTAS2 and pBTAS3 represent new sequences. Ribonuclease protection assays were used to examine the expression of these transcripts under three different conditions of enhanced ethylene production--namely, during fruit ripening, in response to mechanical wounding in fruit tissue, and auxin stimulation in vegetative tissue. Transcripts of pBTAS1 accumulated massively during ripening and wounding but only slightly in response to auxin treatment. Although pBTAS4 was associated with fruit ripening, it was unresponsive to auxin treatment in vegetative tissue. In contrast, the expression of pBTAS2 and pBTAS3 was greatly promoted in auxin-treated vegetative tissue but was absent from fruit tissue. While the expression of pBTAS2 was moderately dependent on wounding, pBTAS3 was unresponsive to wounding. These data support the view that ACC synthase is encoded by a multigene family and that the members are differentially expressed in response to developmental, environmental, and hormonal factors.
Yip, WK. Moore, T. Yang, SF.
Proceedings of the National Academy of Sciences of the United States of America.
1992.
89(6).
2475-9.
Transcriptional regulation of the ethylene response factor LeERF2 in the expression of ethylene biosynthesis genes controls ethylene production in tomato and tobacco.
Plant physiology (2009)
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Fine-tuning of ethylene production plays an important role in developmental processes and in plant responses to stress, but very little is known about the regulation of ethylene response factor (ERF) proteins in ethylene biosynthesis genes and ethylene production. Identifying cis-acting elements and transcription factors that play a role in this process, therefore, is important. Previously, a tomato (Solanum lycopersicum [f. sp. Lycopersicon esculentum]) ERF protein, LeERF2, an allele of TERF2, was reported to confer ethylene triple response on plants. This paper reports the transcriptional modulation of LeERF2/TERF2 in ethylene biosynthesis in tomato and tobacco (Nicotiana tabacum). Using overexpressing and antisense LeERF2/TERF2 transgenic tomato, we found that LeERF2/TERF2 is an important regulator in the expression of ethylene biosynthesis genes and the production of ethylene. Expression analysis revealed that LeERF2/TERF2 is ethylene inducible, and ethylene production stimulated by ethylene was suppressed in antisense LeERF2/TERF2 transgenic tomato, indicating LeERF2/TERF2 to be a positive regulator in the feedback loop of ethylene induction. Further research showed that LeERF2/TERF2 conservatively modulates ethylene biosynthesis in tobacco and that such regulation in tobacco is associated with the elongation of the hypocotyl and insensitivity to abscisic acid and glucose during germination and seedling development. The effects on ethylene synthesis were similar to those of another ERF protein, TERF1, because TERF1 and LeERF2/TERF2 have overlapping roles in the transcriptional regulation of ethylene biosynthesis in tobacco. Biochemical analysis showed that LeERF2/TERF2 interacted with GCC box in the promoter of NtACS3 and with dehydration-responsive element in the promoter of LeACO3, resulting in transcriptional activation of the genes for ethylene biosynthesis in tomato and tobacco, which is a novel regulatory function of ERF proteins in plant ethylene biosynthesis.
Zhang, Z. Zhang, H. Quan, R. Wang, XC. Huang, R.
Plant physiology.
2009.
150(1).
365-77.
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