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Tomato locus carotenoid cleavage dioxygenase7
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Locus | Solyc01g090660 |
Locus name | carotenoid cleavage dioxygenase7 |
Symbol | SlCCD7 |
Gene activity | carotenoid cleavage dioxygenase |
Description | |
Chromosome | 1 |
Arm |
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Links to external databases | None |
Registry name: | None | [Associate registry name] |
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Accession name:
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Alleles (0) | None | [Add new Allele] |
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Associated loci - graphical view | None |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc01g090660.2 SL2.50ch01:84307951..84311676
ATGGATCTTCAATTTGTATCACTACCACCCAACTCTAAAACAAAAGCCAAAATGCAGGCCAAAGCTTGCCATAATATTAA
CAATATTCCTCCAAAACTCTTGCCACCGGCTAAACTGCCGTCCACGGTGGCGATGAGCCCGAGCCAATTAACATTGCCTA
GCCACGTGGCGCGAGCCATAACGATCACCACGTCCCCAACTCATGAAGTTTACACACCAGAAATCGATGACACAGTTACT
GCCTATTGGGATTACCAATTCCTTTTCGTGTCCCAACGTTCTGAAGCTACCGAACCCGTTTCACTTCGGGTCGTGGAAGG
ATCCATACCATCCGATTTCCCTTCCGGTACGTATTACCTCACCGGGCCGGGCCTATTCGCGGATGATCATGGTTCCACGG
TGCACCCTCTAGACGGACACGGCTACTTAAGGACATTTGAAATTGATGGTAGTACGGGTCAGGTTAAGTTTATGGCTAGG
TACATTGAAACGGAGGCTCAGACTGAGGAGCGGGACCCGGTGAGTGGAAAGTGGAGGTTCACTCACCGGGGCCCGTTTTC
GGTACTGAAAGGAGGGAAGATGGTTGGTAATACGAAAGTTATGAAGAATGTGGCGAATACTAGTGTGTTACAATGGGGTG
GTAGGTTGTTTTGTTTGTGGGAAGGTGGTGATCCTTATGAAATTGATTCTAAAACTTTGAATACACTTGGAAAATTTGAA
TTAATTAAGAACTCTGATCAAGTATTAGAAGATAAAAAAATTAGTCATAGTGATTTTTTGGATGTTGCTGCTCAGCTATT
GAAGCCTATATTATATGGTACGATACGAAAGGACTTTTATTGTGCTAAATAATGAAAATTGATCTTTATTTAATGACGAA
TTAGCTAAATATTTTTATTTGCAGGGGTGTTTAAAATGTCTCCAAAGAGATTGTTATCTCATTACAAGATTGATACTCGT
AGAAACAGACTTTTAATCATGTCATGCAACGCAGAGGATATGTTGCTCCCTAGGAGTAATTTTACATTTTATGGTAAGAT
TGTTTAATTTTATGAACTGAAAATTCCATTTAATTAATTTCTTATGTTTCTTCCTTTTTAATGTTTAAAGTATCTATTGC
ACTAGCATTCATGTCTGGTGTAGTGTAAATTAGGTCATTATTTTAAATAAAGAAATCGATTTTATAAAGTTCATATTAAA
GAAACGATTCATTCCTTAAAATCATCGATGTAAAATTTTTCTTATCAGTAAATTAAAGCAACATCAAAAATGAAAGGAAA
AACAAGCTTTTTCATATTATTTTGGCTTTTTTTTTTTGCTTGTAAGCCTGACATCAGTAAGGTGGGATTTTATTATATGT
TTTCCTTTTTTTGAAAATAAATAAATAAATAAGAGTAGAGGGTCCAGTGATAAATAAAATATTTATAATGTTTTTAAACT
AAAACAAGGAGTAAACATAATTAAATGATCATTATCCTAGTATATAATACTCCAATAATCCAACTCTACTTTTTAAAAAA
TTGTATATTTTCATCAACATCACATGTAGATGTAGTACAACGTTAACAAGAATAATTCTTTTGTTTTTGTCTCCATATAT
TCATAATAATTCAAATTCTAGTTAATTTAATTCATTTTATTTTTTTTTTGTCTAGAATTTGATTCCAATTTCCAGCTACT
ACAAAGCCAAGAATTCGAGATCCCAGATCATTTAATGATACATGATTGGGCTTTTACTGATACTCACTATATATTGTTCG
GCAACCGCATCAAACTCGATATCCCCGGTAACTAATTATTCGATTTCTATACTAAAAATAAATATTTCATTTTACTTATT
TATTCACTAAAATTTTGCGTACGCCATCGTTGCAGGATCAATGACAGCAGTATGTGGGCTTTCTCCAATGATATCAGCAT
TATCAGTAAATCCAAGCAAACCAACATCTCCAATTTATTTGCTGCCTAGATTTCGTAACAATAATGTAGAAAGAGATTGG
AGAAAACCTATAGAAGCTCCTTCACAAATGTGGGTGTTACATGTTGGAAATGCTTTTGAAGAAATTGATGAACAAAATGG
AAATCTAAACATACAAATTCAGGCTTCTGGTTGCTCTTACCAATGGTTCAATTTCCAAAAAATGTTTGGTAAGCAAGCAC
GAGTTTATGTCTGCCGCACTGTCAGTATATATAAACTAAAACGTTTTATATAGTAGATGATTAAAACTTAATTTGTTTCT
TTTTCTCCATATATATTTTTCAGGCTATGATTGGCAAAGTGGTAAACTTGATCCTTCCATGATGAATGTAGAAGAAGGAG
AAGAAAAGCTATTGCCTCACTTAGTTCAGGTCTTCTTCCTAATGTTTAGTTTATTATAATAAAATCGTAAAATTATTATT
TTTAAAACAAAAAATAAAATAAATAAAAGACGATTGGACTTAATCAATACATATAATCATTTTATTTCATGTGACACATA
TGATGATACATGAGAAACTTTTTATTTTTTTAAAGATGTTTCAGAATCGGGTCGTTATTATTATTTTATAGTAGTGTCAC
GTGTAATGCGAATTTGTGATCATGGGTATGCAGGTATGTATAAACTTAGATAAAAAAGGGAATTGCACAAAATGTTCAGT
AAATGATCTAAATCCTGAATGGAACAAAGCAGCAGATTTTCCAGCGATGAATCCAGAATTTTCAGGCAGAAAAAACAGAT
ATATTTATGCAGCAACATGTACAGGTTCACGTCAAGCGCTACCCCATTTTCCTTTTGACGCAGTCGTGAAATTAAACGCG
GTTGATAAATCAGTCCAAAAGTGGTCAGCTGGTAGAAGAAGATTCATTGGTGAACCTGTTTTTATTCCAAGAGGAACTAA
TAAAGAGGATGATGGATACCTTCTTGTGGTTGAAGTAAGTAATTATAACTTACATATACACATACACTAATAAAGTTTGC
ATAGTTAGTGTCTTTTAGCACCACATGTCTTATTTTTCTACGAGTAAAATATCACTTTTAGTTACTTTGACTTTAAATAT
GTTATTTTCGAGTGATATATGATTATGTAAGAAAATTTTAGAAGTTTACAATGTGGTAAATTTTTATACTCTAGTGTCAC
CTTTATTTGTTATAGCAGACAATTCGTCTTAATTCAAAGATTGACAAATTAAACGTCGTATTTAAAAGACATTAATTGTA
ATTTATATATAAAAAAAATAGTATTACTTCTATTCTTATGATTTTGTGTGTGAATATTTAATTTGCAGTATGCAGTGTCA
ACACAAAGGTGTTATCTTGTAATTTTGGATGCACAAAAAATTGGAGAGAAGAATGAAGTAGTTGCAAGACTTGAAGTCCC
AAGACATTTGAATTTTCCTCTTGGTTTTCATGGCTTTTGGGCTCCTACCAACTCTAGCCTAGCCAATCTACAAAAAATTG
AATCCAAGTGTAAAAACTCTTGGTCAATGATGAAGGATAACATGGTTAAACTTGGACAATAATAAAAAAAATAATAAAAT
AAATAATGTTTTTATATATATAGATGTTCATTAATAGCTTAATTATGCAAAAGTTTTTTAGAAAATTTAATAAGGTTAAT
TTTTTGGTAAAATAGTTCATTTGTATACTAGAATCCAGAAGAGTTCCAACAATGTCAATTCTTTTATTTCAGATGTAAGC
ATTTTTTTAGTTGTATAAGCTATGATCATATAATTAATTTATTTTG
ATGGATCTTCAATTTGTATCACTACCACCCAACTCTAAAACAAAAGCCAAAATGCAGGCCAAAGCTTGCCATAATATTAA
CAATATTCCTCCAAAACTCTTGCCACCGGCTAAACTGCCGTCCACGGTGGCGATGAGCCCGAGCCAATTAACATTGCCTA
GCCACGTGGCGCGAGCCATAACGATCACCACGTCCCCAACTCATGAAGTTTACACACCAGAAATCGATGACACAGTTACT
GCCTATTGGGATTACCAATTCCTTTTCGTGTCCCAACGTTCTGAAGCTACCGAACCCGTTTCACTTCGGGTCGTGGAAGG
ATCCATACCATCCGATTTCCCTTCCGGTACGTATTACCTCACCGGGCCGGGCCTATTCGCGGATGATCATGGTTCCACGG
TGCACCCTCTAGACGGACACGGCTACTTAAGGACATTTGAAATTGATGGTAGTACGGGTCAGGTTAAGTTTATGGCTAGG
TACATTGAAACGGAGGCTCAGACTGAGGAGCGGGACCCGGTGAGTGGAAAGTGGAGGTTCACTCACCGGGGCCCGTTTTC
GGTACTGAAAGGAGGGAAGATGGTTGGTAATACGAAAGTTATGAAGAATGTGGCGAATACTAGTGTGTTACAATGGGGTG
GTAGGTTGTTTTGTTTGTGGGAAGGTGGTGATCCTTATGAAATTGATTCTAAAACTTTGAATACACTTGGAAAATTTGAA
TTAATTAAGAACTCTGATCAAGTATTAGAAGATAAAAAAATTAGTCATAGTGATTTTTTGGATGTTGCTGCTCAGCTATT
GAAGCCTATATTATATGGTACGATACGAAAGGACTTTTATTGTGCTAAATAATGAAAATTGATCTTTATTTAATGACGAA
TTAGCTAAATATTTTTATTTGCAGGGGTGTTTAAAATGTCTCCAAAGAGATTGTTATCTCATTACAAGATTGATACTCGT
AGAAACAGACTTTTAATCATGTCATGCAACGCAGAGGATATGTTGCTCCCTAGGAGTAATTTTACATTTTATGGTAAGAT
TGTTTAATTTTATGAACTGAAAATTCCATTTAATTAATTTCTTATGTTTCTTCCTTTTTAATGTTTAAAGTATCTATTGC
ACTAGCATTCATGTCTGGTGTAGTGTAAATTAGGTCATTATTTTAAATAAAGAAATCGATTTTATAAAGTTCATATTAAA
GAAACGATTCATTCCTTAAAATCATCGATGTAAAATTTTTCTTATCAGTAAATTAAAGCAACATCAAAAATGAAAGGAAA
AACAAGCTTTTTCATATTATTTTGGCTTTTTTTTTTTGCTTGTAAGCCTGACATCAGTAAGGTGGGATTTTATTATATGT
TTTCCTTTTTTTGAAAATAAATAAATAAATAAGAGTAGAGGGTCCAGTGATAAATAAAATATTTATAATGTTTTTAAACT
AAAACAAGGAGTAAACATAATTAAATGATCATTATCCTAGTATATAATACTCCAATAATCCAACTCTACTTTTTAAAAAA
TTGTATATTTTCATCAACATCACATGTAGATGTAGTACAACGTTAACAAGAATAATTCTTTTGTTTTTGTCTCCATATAT
TCATAATAATTCAAATTCTAGTTAATTTAATTCATTTTATTTTTTTTTTGTCTAGAATTTGATTCCAATTTCCAGCTACT
ACAAAGCCAAGAATTCGAGATCCCAGATCATTTAATGATACATGATTGGGCTTTTACTGATACTCACTATATATTGTTCG
GCAACCGCATCAAACTCGATATCCCCGGTAACTAATTATTCGATTTCTATACTAAAAATAAATATTTCATTTTACTTATT
TATTCACTAAAATTTTGCGTACGCCATCGTTGCAGGATCAATGACAGCAGTATGTGGGCTTTCTCCAATGATATCAGCAT
TATCAGTAAATCCAAGCAAACCAACATCTCCAATTTATTTGCTGCCTAGATTTCGTAACAATAATGTAGAAAGAGATTGG
AGAAAACCTATAGAAGCTCCTTCACAAATGTGGGTGTTACATGTTGGAAATGCTTTTGAAGAAATTGATGAACAAAATGG
AAATCTAAACATACAAATTCAGGCTTCTGGTTGCTCTTACCAATGGTTCAATTTCCAAAAAATGTTTGGTAAGCAAGCAC
GAGTTTATGTCTGCCGCACTGTCAGTATATATAAACTAAAACGTTTTATATAGTAGATGATTAAAACTTAATTTGTTTCT
TTTTCTCCATATATATTTTTCAGGCTATGATTGGCAAAGTGGTAAACTTGATCCTTCCATGATGAATGTAGAAGAAGGAG
AAGAAAAGCTATTGCCTCACTTAGTTCAGGTCTTCTTCCTAATGTTTAGTTTATTATAATAAAATCGTAAAATTATTATT
TTTAAAACAAAAAATAAAATAAATAAAAGACGATTGGACTTAATCAATACATATAATCATTTTATTTCATGTGACACATA
TGATGATACATGAGAAACTTTTTATTTTTTTAAAGATGTTTCAGAATCGGGTCGTTATTATTATTTTATAGTAGTGTCAC
GTGTAATGCGAATTTGTGATCATGGGTATGCAGGTATGTATAAACTTAGATAAAAAAGGGAATTGCACAAAATGTTCAGT
AAATGATCTAAATCCTGAATGGAACAAAGCAGCAGATTTTCCAGCGATGAATCCAGAATTTTCAGGCAGAAAAAACAGAT
ATATTTATGCAGCAACATGTACAGGTTCACGTCAAGCGCTACCCCATTTTCCTTTTGACGCAGTCGTGAAATTAAACGCG
GTTGATAAATCAGTCCAAAAGTGGTCAGCTGGTAGAAGAAGATTCATTGGTGAACCTGTTTTTATTCCAAGAGGAACTAA
TAAAGAGGATGATGGATACCTTCTTGTGGTTGAAGTAAGTAATTATAACTTACATATACACATACACTAATAAAGTTTGC
ATAGTTAGTGTCTTTTAGCACCACATGTCTTATTTTTCTACGAGTAAAATATCACTTTTAGTTACTTTGACTTTAAATAT
GTTATTTTCGAGTGATATATGATTATGTAAGAAAATTTTAGAAGTTTACAATGTGGTAAATTTTTATACTCTAGTGTCAC
CTTTATTTGTTATAGCAGACAATTCGTCTTAATTCAAAGATTGACAAATTAAACGTCGTATTTAAAAGACATTAATTGTA
ATTTATATATAAAAAAAATAGTATTACTTCTATTCTTATGATTTTGTGTGTGAATATTTAATTTGCAGTATGCAGTGTCA
ACACAAAGGTGTTATCTTGTAATTTTGGATGCACAAAAAATTGGAGAGAAGAATGAAGTAGTTGCAAGACTTGAAGTCCC
AAGACATTTGAATTTTCCTCTTGGTTTTCATGGCTTTTGGGCTCCTACCAACTCTAGCCTAGCCAATCTACAAAAAATTG
AATCCAAGTGTAAAAACTCTTGGTCAATGATGAAGGATAACATGGTTAAACTTGGACAATAATAAAAAAAATAATAAAAT
AAATAATGTTTTTATATATATAGATGTTCATTAATAGCTTAATTATGCAAAAGTTTTTTAGAAAATTTAATAAGGTTAAT
TTTTTGGTAAAATAGTTCATTTGTATACTAGAATCCAGAAGAGTTCCAACAATGTCAATTCTTTTATTTCAGATGTAAGC
ATTTTTTTAGTTGTATAAGCTATGATCATATAATTAATTTATTTTG
Download sequence region |
Get flanking sequences on SL2.50ch01
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![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc01g090660.2.1 Carotenoid cleavage dioxygenase 7
ATGGATCTTCAATTTGTATCACTACCACCCAACTCTAAAACAAAAGCCAAAATGCAGGCCAAAGCTTGCCATAATATTAA
CAATATTCCTCCAAAACTCTTGCCACCGGCTAAACTGCCGTCCACGGTGGCGATGAGCCCGAGCCAATTAACATTGCCTA
GCCACGTGGCGCGAGCCATAACGATCACCACGTCCCCAACTCATGAAGTTTACACACCAGAAATCGATGACACAGTTACT
GCCTATTGGGATTACCAATTCCTTTTCGTGTCCCAACGTTCTGAAGCTACCGAACCCGTTTCACTTCGGGTCGTGGAAGG
ATCCATACCATCCGATTTCCCTTCCGGTACGTATTACCTCACCGGGCCGGGCCTATTCGCGGATGATCATGGTTCCACGG
TGCACCCTCTAGACGGACACGGCTACTTAAGGACATTTGAAATTGATGGTAGTACGGGTCAGGTTAAGTTTATGGCTAGG
TACATTGAAACGGAGGCTCAGACTGAGGAGCGGGACCCGGTGAGTGGAAAGTGGAGGTTCACTCACCGGGGCCCGTTTTC
GGTACTGAAAGGAGGGAAGATGGTTGGTAATACGAAAGTTATGAAGAATGTGGCGAATACTAGTGTGTTACAATGGGGTG
GTAGGTTGTTTTGTTTGTGGGAAGGTGGTGATCCTTATGAAATTGATTCTAAAACTTTGAATACACTTGGAAAATTTGAA
TTAATTAAGAACTCTGATCAAGTATTAGAAGATAAAAAAATTAGTCATAGTGATTTTTTGGATGTTGCTGCTCAGCTATT
GAAGCCTATATTATATGGGGTGTTTAAAATGTCTCCAAAGAGATTGTTATCTCATTACAAGATTGATACTCGTAGAAACA
GACTTTTAATCATGTCATGCAACGCAGAGGATATGTTGCTCCCTAGGAGTAATTTTACATTTTATGAATTTGATTCCAAT
TTCCAGCTACTACAAAGCCAAGAATTCGAGATCCCAGATCATTTAATGATACATGATTGGGCTTTTACTGATACTCACTA
TATATTGTTCGGCAACCGCATCAAACTCGATATCCCCGGATCAATGACAGCAGTATGTGGGCTTTCTCCAATGATATCAG
CATTATCAGTAAATCCAAGCAAACCAACATCTCCAATTTATTTGCTGCCTAGATTTCGTAACAATAATGTAGAAAGAGAT
TGGAGAAAACCTATAGAAGCTCCTTCACAAATGTGGGTGTTACATGTTGGAAATGCTTTTGAAGAAATTGATGAACAAAA
TGGAAATCTAAACATACAAATTCAGGCTTCTGGTTGCTCTTACCAATGGTTCAATTTCCAAAAAATGTTTGGCTATGATT
GGCAAAGTGGTAAACTTGATCCTTCCATGATGAATGTAGAAGAAGGAGAAGAAAAGCTATTGCCTCACTTAGTTCAGGTA
TGTATAAACTTAGATAAAAAAGGGAATTGCACAAAATGTTCAGTAAATGATCTAAATCCTGAATGGAACAAAGCAGCAGA
TTTTCCAGCGATGAATCCAGAATTTTCAGGCAGAAAAAACAGATATATTTATGCAGCAACATGTACAGGTTCACGTCAAG
CGCTACCCCATTTTCCTTTTGACGCAGTCGTGAAATTAAACGCGGTTGATAAATCAGTCCAAAAGTGGTCAGCTGGTAGA
AGAAGATTCATTGGTGAACCTGTTTTTATTCCAAGAGGAACTAATAAAGAGGATGATGGATACCTTCTTGTGGTTGAATA
TGCAGTGTCAACACAAAGGTGTTATCTTGTAATTTTGGATGCACAAAAAATTGGAGAGAAGAATGAAGTAGTTGCAAGAC
TTGAAGTCCCAAGACATTTGAATTTTCCTCTTGGTTTTCATGGCTTTTGGGCTCCTACCAACTCTAGCCTAGCCAATCTA
CAAAAAATTGAATCCAAGTGTAAAAACTCTTGGTCAATGATGAAGGATAACATGGTTAAACTTGGACAATAATAAAAAAA
ATAATAAAATAAATAATGTTTTTATATATATAGATGTTCATTAATAGCTTAATTATGCAAAAGTTTTTTAGAAAATTTAA
TAAGGTTAATTTTTTGGTAAAATAGTTCATTTGTATACTAGAATCCAGAAGAGTTCCAACAATGTCAATTCTTTTATTTC
AGATGTAAGCATTTTTTTAGTTGTATAAGCTATGATCATATAATTAATTTATTTTG
ATGGATCTTCAATTTGTATCACTACCACCCAACTCTAAAACAAAAGCCAAAATGCAGGCCAAAGCTTGCCATAATATTAA
CAATATTCCTCCAAAACTCTTGCCACCGGCTAAACTGCCGTCCACGGTGGCGATGAGCCCGAGCCAATTAACATTGCCTA
GCCACGTGGCGCGAGCCATAACGATCACCACGTCCCCAACTCATGAAGTTTACACACCAGAAATCGATGACACAGTTACT
GCCTATTGGGATTACCAATTCCTTTTCGTGTCCCAACGTTCTGAAGCTACCGAACCCGTTTCACTTCGGGTCGTGGAAGG
ATCCATACCATCCGATTTCCCTTCCGGTACGTATTACCTCACCGGGCCGGGCCTATTCGCGGATGATCATGGTTCCACGG
TGCACCCTCTAGACGGACACGGCTACTTAAGGACATTTGAAATTGATGGTAGTACGGGTCAGGTTAAGTTTATGGCTAGG
TACATTGAAACGGAGGCTCAGACTGAGGAGCGGGACCCGGTGAGTGGAAAGTGGAGGTTCACTCACCGGGGCCCGTTTTC
GGTACTGAAAGGAGGGAAGATGGTTGGTAATACGAAAGTTATGAAGAATGTGGCGAATACTAGTGTGTTACAATGGGGTG
GTAGGTTGTTTTGTTTGTGGGAAGGTGGTGATCCTTATGAAATTGATTCTAAAACTTTGAATACACTTGGAAAATTTGAA
TTAATTAAGAACTCTGATCAAGTATTAGAAGATAAAAAAATTAGTCATAGTGATTTTTTGGATGTTGCTGCTCAGCTATT
GAAGCCTATATTATATGGGGTGTTTAAAATGTCTCCAAAGAGATTGTTATCTCATTACAAGATTGATACTCGTAGAAACA
GACTTTTAATCATGTCATGCAACGCAGAGGATATGTTGCTCCCTAGGAGTAATTTTACATTTTATGAATTTGATTCCAAT
TTCCAGCTACTACAAAGCCAAGAATTCGAGATCCCAGATCATTTAATGATACATGATTGGGCTTTTACTGATACTCACTA
TATATTGTTCGGCAACCGCATCAAACTCGATATCCCCGGATCAATGACAGCAGTATGTGGGCTTTCTCCAATGATATCAG
CATTATCAGTAAATCCAAGCAAACCAACATCTCCAATTTATTTGCTGCCTAGATTTCGTAACAATAATGTAGAAAGAGAT
TGGAGAAAACCTATAGAAGCTCCTTCACAAATGTGGGTGTTACATGTTGGAAATGCTTTTGAAGAAATTGATGAACAAAA
TGGAAATCTAAACATACAAATTCAGGCTTCTGGTTGCTCTTACCAATGGTTCAATTTCCAAAAAATGTTTGGCTATGATT
GGCAAAGTGGTAAACTTGATCCTTCCATGATGAATGTAGAAGAAGGAGAAGAAAAGCTATTGCCTCACTTAGTTCAGGTA
TGTATAAACTTAGATAAAAAAGGGAATTGCACAAAATGTTCAGTAAATGATCTAAATCCTGAATGGAACAAAGCAGCAGA
TTTTCCAGCGATGAATCCAGAATTTTCAGGCAGAAAAAACAGATATATTTATGCAGCAACATGTACAGGTTCACGTCAAG
CGCTACCCCATTTTCCTTTTGACGCAGTCGTGAAATTAAACGCGGTTGATAAATCAGTCCAAAAGTGGTCAGCTGGTAGA
AGAAGATTCATTGGTGAACCTGTTTTTATTCCAAGAGGAACTAATAAAGAGGATGATGGATACCTTCTTGTGGTTGAATA
TGCAGTGTCAACACAAAGGTGTTATCTTGTAATTTTGGATGCACAAAAAATTGGAGAGAAGAATGAAGTAGTTGCAAGAC
TTGAAGTCCCAAGACATTTGAATTTTCCTCTTGGTTTTCATGGCTTTTGGGCTCCTACCAACTCTAGCCTAGCCAATCTA
CAAAAAATTGAATCCAAGTGTAAAAACTCTTGGTCAATGATGAAGGATAACATGGTTAAACTTGGACAATAATAAAAAAA
ATAATAAAATAAATAATGTTTTTATATATATAGATGTTCATTAATAGCTTAATTATGCAAAAGTTTTTTAGAAAATTTAA
TAAGGTTAATTTTTTGGTAAAATAGTTCATTTGTATACTAGAATCCAGAAGAGTTCCAACAATGTCAATTCTTTTATTTC
AGATGTAAGCATTTTTTTAGTTGTATAAGCTATGATCATATAATTAATTTATTTTG
![]() ![]() | translated polypeptide sequence |
>Solyc01g090660.2.1 Carotenoid cleavage dioxygenase 7
MDLQFVSLPPNSKTKAKMQAKACHNINNIPPKLLPPAKLPSTVAMSPSQLTLPSHVARAITITTSPTHEVYTPEIDDTVT
AYWDYQFLFVSQRSEATEPVSLRVVEGSIPSDFPSGTYYLTGPGLFADDHGSTVHPLDGHGYLRTFEIDGSTGQVKFMAR
YIETEAQTEERDPVSGKWRFTHRGPFSVLKGGKMVGNTKVMKNVANTSVLQWGGRLFCLWEGGDPYEIDSKTLNTLGKFE
LIKNSDQVLEDKKISHSDFLDVAAQLLKPILYGVFKMSPKRLLSHYKIDTRRNRLLIMSCNAEDMLLPRSNFTFYEFDSN
FQLLQSQEFEIPDHLMIHDWAFTDTHYILFGNRIKLDIPGSMTAVCGLSPMISALSVNPSKPTSPIYLLPRFRNNNVERD
WRKPIEAPSQMWVLHVGNAFEEIDEQNGNLNIQIQASGCSYQWFNFQKMFGYDWQSGKLDPSMMNVEEGEEKLLPHLVQV
CINLDKKGNCTKCSVNDLNPEWNKAADFPAMNPEFSGRKNRYIYAATCTGSRQALPHFPFDAVVKLNAVDKSVQKWSAGR
RRFIGEPVFIPRGTNKEDDGYLLVVEYAVSTQRCYLVILDAQKIGEKNEVVARLEVPRHLNFPLGFHGFWAPTNSSLANL
QKIESKCKNSWSMMKDNMVKLGQ*
MDLQFVSLPPNSKTKAKMQAKACHNINNIPPKLLPPAKLPSTVAMSPSQLTLPSHVARAITITTSPTHEVYTPEIDDTVT
AYWDYQFLFVSQRSEATEPVSLRVVEGSIPSDFPSGTYYLTGPGLFADDHGSTVHPLDGHGYLRTFEIDGSTGQVKFMAR
YIETEAQTEERDPVSGKWRFTHRGPFSVLKGGKMVGNTKVMKNVANTSVLQWGGRLFCLWEGGDPYEIDSKTLNTLGKFE
LIKNSDQVLEDKKISHSDFLDVAAQLLKPILYGVFKMSPKRLLSHYKIDTRRNRLLIMSCNAEDMLLPRSNFTFYEFDSN
FQLLQSQEFEIPDHLMIHDWAFTDTHYILFGNRIKLDIPGSMTAVCGLSPMISALSVNPSKPTSPIYLLPRFRNNNVERD
WRKPIEAPSQMWVLHVGNAFEEIDEQNGNLNIQIQASGCSYQWFNFQKMFGYDWQSGKLDPSMMNVEEGEEKLLPHLVQV
CINLDKKGNCTKCSVNDLNPEWNKAADFPAMNPEFSGRKNRYIYAATCTGSRQALPHFPFDAVVKLNAVDKSVQKWSAGR
RRFIGEPVFIPRGTNKEDDGYLLVVEYAVSTQRCYLVILDAQKIGEKNEVVARLEVPRHLNFPLGFHGFWAPTNSSLANL
QKIESKCKNSWSMMKDNMVKLGQ*
![]() ![]() |
![]() ![]() | [Associate new unigene] |
Unigene ID:
none
![]() ![]() | [Associate new genbank sequence] |
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato.
The Plant journal : for cell and molecular biology (2009)
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Summary The regulation of shoot branching is an essential determinant of plant architecture, integrating multiple external and internal signals. One of the signaling pathways regulating branching involves the MAX (more axillary branches) genes. Two of the genes within this pathway, MAX3/CCD7 and MAX4/CCD8, encode carotenoid cleavage enzymes involved in generating a branch-inhibiting hormone, recently identified as strigolactone. Here, we report the cloning of SlCCD7 from tomato. As in other species, SlCCD7 encodes an enzyme capable of cleaving cyclic and acyclic carotenoids. However, the SlCCD7 protein has 30 additional amino acids of unknown function at its C terminus. Tomato plants expressing a SlCCD7 antisense construct display greatly increased branching. To reveal the underlying changes of this strong physiological phenotype, a metabolomic screen was conducted. With the exception of a reduction of stem amino acid content in the transgenic lines, no major changes were observed. In contrast, targeted analysis of the same plants revealed significantly decreased levels of strigolactone. There were no significant changes in root carotenoids, indicating that relatively little substrate is required to produce the bioactive strigolactones. The germination rate of Orobanche ramosa seeds was reduced by up to 90% on application of extract from the SlCCD7 antisense lines, compared with the wild type. Additionally, upon mycorrhizal colonization, C(13) cyclohexenone and C(14) mycorradicin apocarotenoid levels were greatly reduced in the roots of the antisense lines, implicating SlCCD7 in their biosynthesis. This work demonstrates the diverse roles of MAX3/CCD7 in strigolactone production, shoot branching, source-sink interactions and production of arbuscular mycorrhiza-induced apocarotenoids.
Vogel, JT. Walter, MH. Giavalisco, P. Lytovchenko, A. Kohlen, W. Charnikhova, T. Simkin, AJ. Goulet, C. Strack, D. Bouwmeester, HJ. Fernie, AR. Klee, HJ.
The Plant journal : for cell and molecular biology.
2009.
().
.
A tomato strigolactone-impaired mutant displays aberrant shoot morphology and plant interactions.
Journal of experimental botany (2010)
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Strigolactones are considered a new group of plant hormones. Their role as modulators of plant growth and signalling molecules for plant interactions first became evident in Arabidopsis, pea, and rice mutants that were flawed in strigolactone production, release, or perception. The first evidence in tomato (Solanum lycopersicon) of strigolactone deficiency is presented here. Sl-ORT1, previously identified as resistant to the parasitic plant Orobanche, had lower levels of arbuscular mycorrhizal fungus (Glomus intraradices) colonization, possibly as a result of its reduced ability to induce mycorrhizal hyphal branching. Biochemical analysis of mutant root extracts suggested that it produces only minute amounts of two of the tomato strigolactones: solanacol and didehydro-orobanchol. Accordingly, the transcription level of a key enzyme (CCD7) putatively involved in strigolactone synthesis in tomato was reduced in Sl-ORT1 compared with the wild type (WT). Sl-ORT1 shoots exhibited increased lateral shoot branching, whereas exogenous application of the synthetic strigolactone GR24 to the mutant restored the WT phenotype by reducing the number of lateral branches. Reduced lateral shoot branching was also evident in grafted plants which included a WT interstock, which was grafted between the mutant rootstock and the scion. In roots of these grafted plants, the CCD7 transcription level was not significantly induced, nor was mycorrhizal sensitivity restored. Hence, WT-interstock grafting, which restores mutant shoot morphology to WT, does not restore mutant root properties to WT. Characterization of the first tomato strigolactone-deficient mutant supports the putative general role of strigolactones as messengers of suppression of lateral shoot branching in a diversity of plant species.
Koltai, H. LekKala, SP. Bhattacharya, C. Mayzlish-Gati, E. Resnick, N. Wininger, S. Dor, E. Yoneyama, K. Yoneyama, K. Hershenhorn, J. Joel, DM. Kapulnik, Y.
Journal of experimental botany.
2010.
61(6).
1739-49.
![]() ![]() | [Add ontology annotations] |
biological_process
inferred from mutant phenotype
inferred from anti-sense experiment PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 inferred from direct assay inferred from enzyme assay PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 inferred from mutant phenotype
inferred from anti-sense experiment PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 |
plant_anatomy
inferred from expression pattern
inferred from transcript expression PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 inferred from expression pattern
inferred from transcript expression PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 inferred from expression pattern
inferred from transcript expression PMID:19845881 Athikkkattuvalasu Karthikeyan 2010-01-22 |
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