Clone hba-31p17
 Clone and library
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Clone and library
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| Physical mapping
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| Fingerprint Contig Builds (FPC) |
- not present in Tomato FPC (AGI 2005)
| Marker matches - overgo what's this? |
Plausible matches
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Additional Info | ||||||||
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Conflicted matches
None
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| Marker matches - BLAST |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 334-02 1 | Composite | Fluorescence | Phase | 36.5% |
| 334-03a 1 | Composite | Fluorescence | Phase | 37.3% |
| 334-03b 1 | Composite | Fluorescence | Phase | 34.4% |
| 334-06 1 | Composite | Fluorescence | Phase | 34.0% |
| 334-07 1 | Composite | Fluorescence | Phase | 36.1% |
| 334-11 1 | Composite | Fluorescence | Phase | 36.5% |
| 334-12 1 | Composite | Fluorescence | Phase | 36.9% |
| 334-13 1 | Composite | Fluorescence | Phase | 33.4% |
| 334-14 1 | Composite | Fluorescence | Phase | 38.8% |
| 334-15 1 | Composite | Fluorescence | Phase | 33.4% |
| 334-18 1 | Composite | Fluorescence | Phase | 39.3% |
| 334-19 1 | Composite | Fluorescence | Phase | 33.4% |
| 334-21 1 | Composite | Fluorescence | Phase | 34.6% |
| 334-22 1 | Composite | Fluorescence | Phase | 33.9% |
| 334-24 1 | Composite | Fluorescence | Phase | 38.7% |
| 334-25 1 | Composite | Fluorescence | Phase | 33.4% |
| 334-27 1 | Composite | Fluorescence | Phase | 32.3% |
| 334-28 1 | Composite | Fluorescence | Phase | 36.8% |
| Mean±sd | 35.5%±2.2% | |||
Given an estimated length of 15.7µm for chromosome 3Q and the mean percentage above, this BAC is approximately 5.6µm±0.3µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
| IL Mapping |
| Sequencing
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This clone is being sequenced by the Chromosome 3 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 3
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HTGS phase
2 - fragmented, ordered
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Sequencing Status
complete
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Sequencing Organization
Uploaded by account 'jianfeng-ren'
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Full Sequence
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End Sequences
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Warnings
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FTP | ||
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Chromosome Assembly
this clone is not part of a chromosome assembly
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| Annotations
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Browse
LE_HBa0031P17 has no browsable sequence annotations
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Download
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Working
