Clone hba-69c22

Clone and library  
Clone
Clone name
hba-69c22
LE_HBa0069C22
C04HBa0069C22
P069C22
Clone type
BAC
Contamination
none
Estimated length
73,341
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLEC-20-F13Tomato-EXPEN 2000plate 9B2
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
cLED-7-G231e-1721599.00evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 4
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 4 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 4
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
107,671 bp
C04HBa0069C22.1
CU915758.4 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.07 MB)
End Sequences
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 107,671 is 46.8% different from estimated length 73,341
 FTP
Chromosome 4 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 4
  
Restriction Fragments
HindIII in vitro (15)
2248, 2649, 2670, 2779, 2801, 3406, 3864, 4093, 4476, 4672, 5836, 6149, 8726, 8918, 10054
HindIII in silico (30)
1113, 1116, 1146, 1223, 1242, 1280, 1281, 1281, 1285, 1319, 1354, 1398, 1503, 1578, 1812, 2127, 2657, 2663, 2703, 2776, 2817, 3438, 4419, 4594, 7588, 8519, 8769, 8925, 9666, 9835
Fragment Lengths Match Score
0.63
Annotations  
Browse
LE_HBa0069C22 has no browsable sequence annotations
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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