Clone hba-115g22

Clone and library  
Clone
Clone name
hba-115g22
LE_HBa0115G22
C12HBa0115G22
P115G22
Clone type
BAC
Contamination
none
Estimated length
118,235
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1676Tomato-EXPEN 2000plate 4G9
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 12
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
144,653 bp
C12HBa0115G22.1
AC209587.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (253.41 MB)
End Sequences
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
 FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 12
  
Restriction Fragments
HindIII in vitro (15)
1814, 2271, 3197, 3464, 4303, 5439, 5676, 7464, 8307, 8949, 10209, 10727, 11257, 17579, 17579
HindIII in silico (37)
1006, 1044, 1186, 1201, 1246, 1254, 1284, 1310, 1312, 1399, 1416, 1539, 1617, 1770, 1793, 2036, 2177, 2203, 2272, 2276, 2862, 3120, 3204, 3205, 3380, 3455, 3460, 4250, 5149, 5309, 7244, 8275, 8897, 9806, 10212, 10760, 15808
Fragment Lengths Match Score
0.64
Annotations  
Browse
LE_HBa0115G22 has no browsable sequence annotations
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Sequencing on Chromosome
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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