Clone hba-107d15

Clone and library  
Clone
Clone name
hba-107d15
LE_HBa0107D15
C09HBa0107D15
P107D15
Clone type
BAC
Contamination
none
Estimated length
132,154
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg221 : [coherent], 11 members:
C12HBa0004J02, C12HBa0008G21, C12HBa0046F10, C12HBa0063E16, C09HBa0107D15, LE_HBa0120L04, C12HBa0121A09, LE_HBa0171J11, LE_HBa0190J18, LE_HBa0298O16, LE_HBa0321C23
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG394Tomato-EXPEN 2000plate 4G4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 9
FISH map 
View on FISH map chromosome 9
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
138-04 1CompositeFluorescencePhase32.1%
138-05 1CompositeFluorescencePhase27.4%
138-07b 1CompositeFluorescencePhase32.5%
138-08 1CompositeFluorescencePhase28.9%
157-08a 1CompositeFluorescencePhase33.8%
157-08b 1CompositeFluorescencePhase28.2%
157-09 1CompositeFluorescencePhase36.1%
138-12 1CompositeFluorescencePhase30.1%
157-13 1CompositeFluorescencePhase28.1%
157-14 1CompositeFluorescencePhase36.3%
138-18 1CompositeFluorescencePhase30.1%
157-24 1CompositeFluorescencePhase30.1%
157-30 1CompositeFluorescencePhase33.5%
Mean±sd31.3%±3.0%

Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 3.0µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 9
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
138,225 bp
C09HBa0107D15.1
EU139071.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (345.07 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
 FTP
Chromosome 9 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 9
  
Restriction Fragments
HindIII in vitro (36)
1011, 1084, 1155, 1291, 1354, 1473, 1646, 1646, 1710, 1948, 2009, 2134, 2356, 2500, 2755, 2861, 2980, 3053, 3133, 3205, 3314, 3408, 3506, 3506, 3702, 4377, 4542, 4748, 5222, 5678, 6015, 6521, 6742, 8510, 9275, 11784
HindIII in silico (34)
1001, 1070, 1146, 1280, 1350, 1640, 1650, 1653, 1713, 1922, 2126, 2376, 2511, 2765, 2885, 2981, 3066, 3132, 3335, 3436, 3506, 3553, 3678, 3738, 4374, 4647, 5214, 5767, 6411, 6719, 7281, 8481, 11663, 12729
Fragment Lengths Match Score
0.96
Annotations  
Browse
LE_HBa0107D15 has no browsable sequence annotations
Download
 
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: