Clone hba-138j3

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Clone
Clone name
hba-138j3
LE_HBa0138J03
C05HBa0138J03
P138J03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1746Tomato-EXPEN 2000plate 11C12
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 5
FISH map 
View on FISH map chromosome 5
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
297-01 1CompositeFluorescencePhase73.8%
297-03 1CompositeFluorescencePhase71.5%
297-04 1CompositeFluorescencePhase70.6%
297-07 1CompositeFluorescencePhase75.0%
297-11 1CompositeFluorescencePhase72.2%
297-16 1CompositeFluorescencePhase72.5%
297-18 1CompositeFluorescencePhase72.9%
297-19 1CompositeFluorescencePhase72.9%
297-20 1CompositeFluorescencePhase73.5%
297-21 1CompositeFluorescencePhase75.2%
297-22 1CompositeFluorescencePhase70.3%
297-27 1CompositeFluorescencePhase71.8%
297-29 1CompositeFluorescencePhase69.6%
297-34 1CompositeFluorescencePhase68.8%
297-38 1CompositeFluorescencePhase74.7%
Mean±sd72.4%±1.9%

Given an estimated length of 7.7µm for chromosome 5Q and the mean percentage above, this BAC is approximately 5.6µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Indian Agricultural Research Institute
Full Sequence
145,193 bp
C05HBa0138J03.2
AC196876.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (1368.31 MB)
End Sequences
Warnings
none
FTP
Chromosome 5 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 5
  
Annotations  
Browse
LE_HBa0138J03 has no browsable sequence annotations
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temporarily unavailable
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End Sequences

e.g. crystallin
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Map
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 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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