Clone hba-183g3

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Clone
Clone name
hba-183g3
LE_HBa0183G03
C01HBa0183G03
P183G03
Clone type
BAC
Contamination
none
Estimated length
34,279
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0896Tomato-EXPEN 2000plate 9E8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
1 - fragmented, unordered
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
284,344 bp
C01HBa0183G03.3
AC239648.12 (GenBank) 		[View]
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 284,344 is 729.5% different from estimated length 34,279
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Restriction Fragments
HindIII in vitro (4)
3990, 6848, 10572, 12869
HindIII in silico (71)
1033, 1085, 1094, 1133, 1134, 1238, 1305, 1331, 1332, 1416, 1421, 1473, 1501, 1516, 1516, 1563, 1566, 1670, 1761, 1809, 1809, 1949, 2052, 2247, 2350, 2452, 2507, 2545, 2601, 2626, 2629, 2636, 2973, 3146, 3164, 3208, 3228, 3349, 3360, 3382, 3426, 3589, 3594, 3652, 3751, 3837, 4045, 4399, 4405, 4462, 4491, 4649, 4785, 4834, 5121, 5126, 5190, 5356, 6116, 6361, 6753, 6840, 6878, 7190, 7204, 7418, 8858, 10216, 10491, 12809, 12981
Fragment Lengths Match Score
0.37
Annotations  
Browse
LE_HBa0183G03 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
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IL Bin Mapping
Assigned to project
Mapped to chr
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 Verification

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