Clone hba-165b12

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Clone
Clone name
hba-165b12
LE_HBa0165B12
C12HBa0165B12
P165B12
Clone type
BAC
Contamination
none
Estimated length
79,320
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3430 : [coherent], 2 members:
C12HBa0165B12, C12HBa0336P05
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG394Tomato-EXPEN 2000plate 4G4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 12
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
121,526 bp
C12HBa0165B12.1
AC212767.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (219.69 MB)
End Sequences
Warnings
  • sequence length 121,526 is 53.2% different from estimated length 79,320
 FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 12
  
Restriction Fragments
HindIII in vitro (20)
1029, 1097, 1435, 1435, 1536, 1706, 2149, 2949, 3105, 3311, 3342, 4473, 4897, 5955, 6064, 6249, 6249, 6506, 7010, 8823
HindIII in silico (28)
1033, 1083, 1395, 1430, 1439, 1544, 1717, 2151, 2958, 3099, 3106, 3332, 3343, 3369, 4447, 4476, 4715, 4741, 5709, 5830, 6050, 6082, 6097, 6099, 6434, 7001, 8772, 8945
Fragment Lengths Match Score
0.85
Annotations  
Browse
LE_HBa0165B12 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
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Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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