Clone hba-180o10

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Clone
Clone name
hba-180o10
LE_HBa0180O10
C12HBa0180O10
P180O10
Clone type
BAC
Contamination
none
Estimated length
80,643
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg923 : [coherent], 11 members:
C12HBa0161B22, C12HBa0161C09, C12HBa0180E20, C12HBa0180O10, C12HBa0189E07, C12HBa0192D17, C12HBa0222K23, C12HBa0248C03, C12HBa0262D22, C12HBa0292B18, C12HBa0336A13
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLET-8-K4Tomato-EXPEN 2000plate 4D6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 12
HTGS phase
1 - fragmented, unordered
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'italy'
Full Sequence
151,333 bp
C12HBa0180O10.1
AC216346.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (295.39 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 151,333 is 87.7% different from estimated length 80,643
 FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (15)
1034, 2025, 2297, 2436, 3083, 3458, 3995, 4307, 4646, 5907, 6022, 6270, 7535, 8749, 18879
HindIII in silico (41)
1020, 1026, 1040, 1046, 1099, 1227, 1235, 1335, 1351, 1469, 1584, 1783, 1986, 2004, 2252, 2263, 2281, 2354, 2441, 2614, 2664, 2858, 2879, 3055, 3073, 3119, 3247, 3256, 3428, 3991, 4066, 4208, 4569, 5542, 5629, 6181, 6225, 6847, 7172, 12276, 17263
Fragment Lengths Match Score
0.64
Annotations  
Browse
LE_HBa0180O10 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
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Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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