Clone hba-236e2

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Clone
Clone name
hba-236e2
LE_HBa0236E02
C02HBa0236E02
P236E02
Clone type
BAC
Contamination
none
Estimated length
75,327
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG48Tomato-EXPEN 2000plate 6B6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 2
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Korea
IL-mapped to chromosome
-
IL-mapped to IL segment
2-J
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 2 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 2
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Korea Research Institute of Bioscience and Biotechnology
Full Sequence
131,776 bp
C02HBa0236E02.1
AC215430.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (246.30 MB)
End Sequences
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 131,776 is 74.9% different from estimated length 75,327
 FTP
Chromosome 2 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (12)
3354, 3434, 3548, 4529, 4690, 5991, 5991, 6963, 7102, 8688, 9919, 11118
HindIII in silico (35)
1032, 1175, 1241, 1242, 1287, 1300, 1335, 1426, 1626, 1737, 1864, 1895, 1899, 1957, 2115, 2274, 2361, 2372, 2444, 2778, 3391, 3452, 3578, 3650, 4002, 4500, 4596, 5665, 5764, 6899, 6904, 7052, 8592, 9840, 10873
Fragment Lengths Match Score
0.53
Annotations  
Browse
LE_HBa0236E02 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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