Clone hba-1n12

Clone and library  
Clone
Clone name
hba-1n12
LE_HBa0001N12
P001N12
Clone type
BAC
Contamination
none
Estimated length
121,619
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TM18Tomato-EXPEN 2000plate 9A5
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
912-12 1CompositeFluorescencePhase6.8%
912-17 1CompositeFluorescencePhase20.3%
974-20 1CompositeFluorescencePhase14.4%
974-29 1CompositeFluorescencePhase14.3%
974-30 1CompositeFluorescencePhase14.3%
974-33 1CompositeFluorescencePhase19.1%
974-41 1CompositeFluorescencePhase14.6%
912-42a 1CompositeFluorescencePhase11.8%
912-42b 1CompositeFluorescencePhase16.7%
974-45a 1CompositeFluorescencePhase13.0%
974-45b 1CompositeFluorescencePhase9.7%
912-50 1CompositeFluorescencePhase6.5%
912-57 1CompositeFluorescencePhase16.8%
Mean±sd13.7%±4.2%

Given an estimated length of 8.0µm for chromosome 11Q and the mean percentage above, this BAC is approximately 1.1µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
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Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (27)
1059, 1105, 1153, 1258, 1494, 1494, 2005, 2173, 2514, 2886, 2886, 2886, 3552, 4056, 4056, 4056, 4223, 4479, 6063, 6159, 6159, 7517, 7917, 7917, 9276, 11638, 11638
Annotations  
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LE_HBa0001N12 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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