Clone hba-286k14

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Clone
Clone name
hba-286k14
LE_HBa0286K14
C01HBa0286K14
P286K14
Clone type
BAC
Contamination
none
Estimated length
112,179
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg308 : [coherent], 1 members:
C01HBa0286K14
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1964Tomato-EXPEN 2000plate 3H10
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
39,160 bp
C01HBa0286K14.1
AC239434.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.03 MB)
End Sequences
None
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 39,160 is 65.1% different from estimated length 112,179
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Restriction Fragments
HindIII in vitro (24)
1418, 1567, 2093, 2172, 2192, 2285, 2370, 2638, 2717, 2822, 2968, 3291, 3507, 3507, 4528, 6006, 6096, 6233, 6548, 7136, 7936, 8834, 9700, 13615
HindIII in silico (9)
1555, 1571, 2310, 2390, 2748, 3530, 6494, 7852, 8815
Fragment Lengths Match Score
0.65
Annotations  
Browse
LE_HBa0286K14 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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