Clone hba-286n17

Clone and library  
Clone
Clone name
hba-286n17
LE_HBa0286N17
C06HBa0286N17
P286N17
Clone type
BAC
Contamination
none
Estimated length
90,658
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLET-5-C8Tomato-EXPEN 2000plate 4D12
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 6
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 6 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 6
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
123,007 bp
C06HBa0286N17.1
AC209513.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (114.10 MB)
End Sequences
None
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
 FTP
Chromosome 6 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 6
  
Restriction Fragments
HindIII in vitro (17)
2191, 2460, 3145, 3165, 3452, 3479, 3613, 4499, 5805, 6011, 6011, 6656, 6712, 7279, 7279, 8817, 10084
HindIII in silico (34)
1003, 1028, 1096, 1103, 1104, 1274, 1361, 1548, 1571, 1717, 1774, 1790, 1884, 1993, 2079, 2183, 2206, 2471, 2907, 3140, 3159, 3486, 3490, 3639, 4467, 5475, 5682, 5727, 5753, 6656, 7184, 7233, 8726, 9940
Fragment Lengths Match Score
0.67
Annotations  
Browse
LE_HBa0286N17 has no browsable sequence annotations
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Seq. Center Reported Status
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 and  bp
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Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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