Clone hba-247j1

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Clone
Clone name
hba-247j1
LE_HBa0247J01
C10HBa0247J01
P247J01
Clone type
BAC
Contamination
none
Estimated length
101,227
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
SSR248Tomato-EXPEN 2000plate 1H3
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 10
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
150,891 bp
C10HBa0247J01.2
AC239577.4 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.09 MB)
End Sequences
Warnings
  • sequence length 150,891 is 49.1% different from estimated length 101,227
 FTP
Chromosome 10 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (19)
1796, 1887, 1997, 1997, 2086, 2181, 2694, 3268, 3435, 3603, 3603, 4391, 4706, 5733, 7830, 9305, 12613, 12613, 15489
HindIII in silico (36)
1045, 1147, 1248, 1499, 1621, 1638, 1769, 2003, 2078, 2144, 2172, 2280, 2380, 2681, 2695, 2718, 2731, 3147, 3240, 3275, 3420, 3437, 3507, 3555, 3603, 3622, 3664, 4365, 4623, 5409, 5418, 7740, 9164, 12297, 12301, 14941
Fragment Lengths Match Score
0.73
Annotations  
Browse
LE_HBa0247J01 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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