Clone hba-245m17

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Clone
Clone name
hba-245m17
LE_HBa0245M17
C11HBa0245M17
P245M17
Clone type
BAC
Contamination
none
Estimated length
148,127
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
CT55Tomato-EXPEN 2000plate 10C7
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 11
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
454-02 1CompositeFluorescencePhase49.8%
454-06 1CompositeFluorescencePhase47.6%
454-07 1CompositeFluorescencePhase52.9%
454-09 1CompositeFluorescencePhase49.7%
454-10 1CompositeFluorescencePhase51.3%
454-13 1CompositeFluorescencePhase48.8%
454-14 1CompositeFluorescencePhase54.3%
454-16 1CompositeFluorescencePhase51.6%
454-19 1CompositeFluorescencePhase50.8%
454-20 1CompositeFluorescencePhase49.5%
454-21 1CompositeFluorescencePhase53.7%
454-22 1CompositeFluorescencePhase49.2%
454-36 1CompositeFluorescencePhase48.9%
454-37 1CompositeFluorescencePhase51.0%
454-39 1CompositeFluorescencePhase53.5%
454-45 1CompositeFluorescencePhase47.9%
454-47 1CompositeFluorescencePhase54.1%
454-51 1CompositeFluorescencePhase51.8%
454-55 1CompositeFluorescencePhase48.5%
454-61 1CompositeFluorescencePhase49.7%
Mean±sd50.7%±2.1%

Given an estimated length of 8.0µm for chromosome 11Q and the mean percentage above, this BAC is approximately 4.1µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 11
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Full Sequence
137,646 bp
C11HBa0245M17.2
AC212439.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (113.66 MB)
End Sequences
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
 FTP
Chromosome 11 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (13)
3400, 4762, 5114, 5452, 6254, 6745, 7613, 8933, 10200, 11189, 15355, 31555, 31555
HindIII in silico (27)
1036, 1469, 1551, 1817, 1979, 1995, 2044, 2298, 2413, 2479, 2645, 2728, 3183, 3234, 3317, 3411, 3456, 4296, 4662, 4844, 5062, 5194, 6083, 6719, 9521, 15256, 29981
Fragment Lengths Match Score
0.63
Annotations  
Browse
LE_HBa0245M17 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
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Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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