Clone hba-4a15

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Clone
Clone name hba-4a15 LE_HBa0004A15 C12HBa0004A15 P004A15
Clone type BAC
Contamination none
Estimated length 117,487

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

Ordering Information
BAC Clones BAC clones can be ordered from the clone ordering page at TFGD

Physical mapping

Fingerprint Contig Builds (FPC)

not present in Tomato FPC (AGI 2005)

Marker matches - overgo what's this?

None

Marker matches - BLAST

Marker	Evalue	Identity %	Score	Params
T0814	4e-43	1	170.00	evalue cutoff: 1e-10; min len = 25; min identity=0.96

Marker matches - manual

None

Physical map (from marker matches)

View on physical map chromosome 12

FISH map

Not on FISH map

FISH images

None

IL Mapping

None

Sequencing

This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.

Sequencing Project

Chromosome 12

HTGS phase

2 - fragmented, ordered

Sequencing Status

in_progress

Sequencing Organization

Uploaded by account 'italy'

Full Sequence

117,097 bp
C12HBa0004A15.3
AC217494.3 (GenBank)

[View]
[Download fasta]
[Download full submission] (8.12 MB)

End Sequences

LE_HBa0004A15_SP6_796 (Good)
LE_HBa0004A15_T7_797 (Good)

Warnings

sequence is not finished to HTGS3

FTP

Chromosome 12 Sequencing repository (FTP)

Chromosome Assembly

this clone is not part of a chromosome assembly

Restriction Fragments

HindIII in vitro (29)

1530, 1530, 1643, 2042, 2109, 2306, 2464, 2515, 2689, 2782, 3007, 3045, 3045, 3105, 3227, 3417, 3417, 3552, 3652, 3941, 4200, 4470, 4563, 5121, 6593, 7140, 7579, 8280, 14523

HindIII in silico (29)

1103, 1329, 1541, 1642, 2038, 2101, 2326, 2474, 2505, 2690, 2728, 2792, 3001, 3064, 3128, 3129, 3225, 3447, 3573, 3699, 4001, 4234, 4532, 4869, 6711, 7060, 7368, 10250, 14038

Fragment Lengths Match Score

0.98

Annotations

Browse

LE_HBa0004A15 has no browsable sequence annotations

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User comments

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Estimated Length

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GenBank Accession (version insensitive)

e.g. AP009318.1 or AP009318

Sequencing on Chromosome

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Annotations

End Sequences

e.g. crystallin

Overgo match to marker what's this?

Map	Map position cM and
Chromosome / Linkage Group

IL Bin Mapping

Assigned to project	Mapped to chr
Mapped to bin

Verification

Verified with internal read resequencing
Verified by bac end resequencing

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Clone hba-4a15

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