Genomic Clone End Sequence - Sol Genomics Network

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Clone Read LE_HBa0193D22_SP6_108855

Sequence Read

Read Class

BAC ends

Read ID

LE_HBa0193D22_SP6_108855

Primer

SP6

ID from Seq. Facility

LE_HBa_193_D22-SP6

Chromatogram

[download]

Sequence

Version

1 (current)

Length (bp)

423 trimmed for vector and quality, 973 raw

Genbank Accession

DU094190

Sequence

Show Raw Sequence

>LE_HBa0193D22_SP6_108855 (trimmed for quality and cloning vector)
ATGGATGGCCGAGTACTTCTACAATCGAGTGCAAAATGTGATAACAAAGTATAGCATTGAACGGCACTGGCTATCCTTGAATGAAGAAGGGGGTGGCATG
AATGATGTTTTTTATAAGTTATACAGTGTAACGGTACGTATATTATGTCAAATGAACTTCCTTACATTTTTAACAACTTTCTAGTTTCTGTTGTATAATT
TTTGTTCCAGTTGATGTCGATGTCACAAATGAGCACACTTGAACTGATTTCTTTTTTGGAATTCTCAATTGGACTTGAATTTGATACAATTGTATATTTG
TTCTTCTTTACATTTGCATTTTTTTGTATTCTGCGCCTTGTGTCCCGTTACTTCTTTTTCCAAACTGCTTTGGACTGTTTTTCCTTGATCCGGTAGTCTA
TCGGAAACAGTCTCTCTACCTCT

Warnings:

Not screened for chimera
Not screened for repetitive elements

Quality Report
Processed by SGN	Vector signature flanking vector not found in read	Quality trim threshold 20.5	Sequence entropy 0.944341	Expected error % 0.592493

Sequence Annotations

Automatic Annotations

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At5g12960.1

Score 80 E Value 4e-16 Identity 27.10% Align. Length 128bp (30.26%) Frame 3

68418.m01486 expressed protein

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At5g12950.1

Score 76 E Value 6e-15 Identity 25.60% Align. Length 128bp (30.26%) Frame 3

68418.m01485 expressed protein putative secreted protein SCF41.30c, Streptomyces coelicolor, EMBL:SCF41_30

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

gb|AAO42255.1|

Score 80 E Value 2e-14 Identity 27.10% Align. Length 128bp (30.26%) Frame 3

unknown protein [Arabidopsis thaliana] ref|NP_196800.2| expressed protein [Arabidopsis thaliana]

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

emb|CAB88260.1|

Score 80 E Value 2e-14 Identity 27.10% Align. Length 128bp (30.26%) Frame 3

putative protein [Arabidopsis thaliana] pir||T49910 hypothetical protein T24H18.130 - Arabidopsis thaliana

Manual Annotations

No manual annotations found.

BAC

Clone LE_HBa0193D22

Clone
Clone name hba-193d22 LE_HBa0193D22 P193D22
Clone type BAC
Contamination none
Estimated length 109,767

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

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