Clone Read LE_HBa0193O07_T7_109352

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193O07_T7_109352
Primer
T7
ID from Seq. Facility
LE_HBa_193_O07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
762 trimmed for vector and quality, 935 raw
Genbank Accession
DU094466
Sequence
>LE_HBa0193O07_T7_109352 (raw untrimmed)
TTCAACCCGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTAAATCTCTTTATGGATCCTTAAAGCTCTAAAACAATGGAATGA
GAAATTTAGAAGAGCTATGATTTCTAATGGCTACTCAATCAATGGTGGTGATATTTGTATATTTAGTAAATTCAAGAAAAATCTGGTGTTATAATATGTC
TTTATGTAGATGATATGCTGATCTTTGGAACTGATATTGAAAGAGTCAAAGAAACAAAAATTTTTCTAGCTTCTCAATTTGAAATGAAAGATCTTGGAGA
AGCTGATGTAATTTTGGGTATTAAAATTATAAGATCAGCAAATGGCTTGACTCTTACTCAATCAAGTTATATTGAGAAAGTTCTAAAGAAGTTTGGTCAC
TTTGATGACAAACCTGCTCCTACACCATTTGATCCTAGCATCAAACTAATGCAGAACTCTAGTGATGTTCTCGATCAGCTGGCATATTCTCAGATTGTTG
GGAGTCTTATGTATGCCATGCATTGTACCAGGCCGGATATTGGTTACGCAGTAGGAACTTTGAGCAAGTTTACTAGTAATCCCGGAGTTGAACATTGGAA
TGCCTTAATTCGTGTTTTAAGATACCTGAAGGGTACAATTAATGTTGGCCTGCATTATTCTACATTTCCCATTGTTCTTGAAGGCTATAGTGATGCTACT
TGGAATTCTGATCCGAATGACTCTAAATCTATTACTGCTTGGATTTTCACTTTGGCTGGAGCAGCGATCTCTTGGAAATCAAAGAAGCAAACATGTATTA
CTCATTCAACCATGGAGTCAAAATTCATATCATGTCTTTCTCTGGAAAAAAAGTGATTGGTTCGATTAATGTAATAAAATTCCTTTGAAAAGAACCAATA
CCCTTCTAATATCTTTGGGATAACAAGCCGCCTTT
>LE_HBa0193O07_T7_109352 (trimmed for quality and cloning vector)
AGCTTATTAAATCTCTTTATGGATCCTTAAAGCTCTAAAACAATGGAATGAGAAATTTAGAAGAGCTATGATTTCTAATGGCTACTCAATCAATGGTGGT
GATATTTGTATATTTAGTAAATTCAAGAAAAATCTGGTGTTATAATATGTCTTTATGTAGATGATATGCTGATCTTTGGAACTGATATTGAAAGAGTCAA
AGAAACAAAAATTTTTCTAGCTTCTCAATTTGAAATGAAAGATCTTGGAGAAGCTGATGTAATTTTGGGTATTAAAATTATAAGATCAGCAAATGGCTTG
ACTCTTACTCAATCAAGTTATATTGAGAAAGTTCTAAAGAAGTTTGGTCACTTTGATGACAAACCTGCTCCTACACCATTTGATCCTAGCATCAAACTAA
TGCAGAACTCTAGTGATGTTCTCGATCAGCTGGCATATTCTCAGATTGTTGGGAGTCTTATGTATGCCATGCATTGTACCAGGCCGGATATTGGTTACGC
AGTAGGAACTTTGAGCAAGTTTACTAGTAATCCCGGAGTTGAACATTGGAATGCCTTAATTCGTGTTTTAAGATACCTGAAGGGTACAATTAATGTTGGC
CTGCATTATTCTACATTTCCCATTGTTCTTGAAGGCTATAGTGATGCTACTTGGAATTCTGATCCGAATGACTCTAAATCTATTACTGCTTGGATTTTCA
CTTTGGCTGGAGCAGCGATCTCTTGGAAATCAAAGAAGCAAACATGTATTACTCATTCAACC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.956574
Expected error %
0.963141
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 136 E Value 1e-32 Identity 12.50% Align. Length 617bp (80.97%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR01716.1| Score 273 E Value 5e-76 Identity 60.30% Align. Length 748bp (98.16%) Frame 3
putative Gag and Pol polyprotein [Oryza sativa (japonica cultivar-group)] ref|XP_462724.1| putative Gag and Pol polyprotein [Oryza sativa (japonica cultivar-group)] ref|NP_918246.1| putative polyprotein from transposon TNT 1-94 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_918288.1| Score 273 E Value 5e-76 Identity 60.30% Align. Length 748bp (98.16%) Frame 3
putative polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193O07
Clone
Clone name
hba-193o7
LE_HBa0193O07
P193O07
Clone type
BAC
Contamination
none
Estimated length
40,950
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found