Clone Read LE_HBa0131H06_SP6_112082

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131H06_SP6_112082
Primer
SP6
ID from Seq. Facility
LE_HBa_131_H06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 689 raw
Sequence
>LE_HBa0131H06_SP6_112082 (raw untrimmed)
GCCGGTTTGAAAAAAGAAGAAAATACAGGAGTATGGAGGCTCGGACCTAAATAAATTAGGAGGAGGTTTTGATGTCCCTTGAAGGGCACCGCGCNAGANC
AACGGGNCACCAGCCGCCTTAAGGGGGGCGGAGAAAAAGGAGGGAGAGGAGCAGANCGAAGCCCCAAGACACGACAGACGAGCAAAGGGAGATCCAAGAG
AGAGCGCCAGCACCCACAAAGCCNACCAAGAAGGGGAGGCAGAGAAAAGANAA
ACAGAAAGAGGAGGAAAGCAACAGCCAAAAAGCACGAGAGACCCCAG
AAGAAGAAGAAAGAAGAAAAAANGCAGACACCAGGCGGAGGGGCGAACAAAAACGGGGAACGCAAACACGAAAGCAAAAGGCACGAAAAACCACAAACCG
GCACGACAAGAGACGACAAGACAGAGAAACCCCCAAGGCGCGGGAGGGGGGCGCCCACAGCCCCACCGCCAGCAGACCCCCACCAAACGCCGAGCCGAGC
GCACGCGGAGAGACGCGAGCGGAACCCCCGAGAGCACACGCCACACNACCCCAGCACAAAACGGAACAGACAACGCAGCGAAGACCACCGNAGAAGCAGA
GACAAAGCGAACGCCCGACGGACCAGCAAAGGACCCNCACCAGAAGACCCGCAGNCAAAAACGCACACGACAGAACAACCGGCAGCGAA
>LE_HBa0131H06_SP6_112082 (trimmed for quality and cloning vector)
ACAGAAAG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.6627
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131H06
Clone
Clone name
hba-131h6
LE_HBa0131H06
P131H06
Clone type
BAC
Contamination
none
Estimated length
97,125
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found