Genomic Clone End Sequence - Sol Genomics Network

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Clone Read LE_HBa0163B13_T7_123291

Sequence Read

Read Class

BAC ends

Read ID

LE_HBa0163B13_T7_123291

Primer

ID from Seq. Facility

LE_HBa_163_B13-T7

Chromatogram

[download]

Sequence

Version

1 (current)

Length (bp)

189 trimmed for vector and quality, 825 raw

Sequence

Show Raw Sequence

>LE_HBa0163B13_T7_123291 (trimmed for quality and cloning vector)
GTACTTCTACAATCGAGTGCAAAATGTGATAACAAAGTATAGCATTGAACGGCACTGGCTATCCTTGAATGAAGAAACTGGTGGCATGAATGATGTTCTT
TATAAGTTATACAGTGTAACGGTACGTATATTATGTCAAATGAACTTCCTTACAATTTTTTCATCTTTCTAGTTTCTGTTGTATAATTT

Warnings:

Not screened for chimera
Not screened for repetitive elements

Quality Report
Processed by SGN	Vector signature flanking vector not found in read	Quality trim threshold 20.5	Sequence entropy 0.940106	Expected error % 0.5235

Sequence Annotations

Automatic Annotations

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At5g12960.1

Score 80 E Value 2e-16 Identity 29.20% Align. Length 119bp (62.96%) Frame 3

68418.m01486 expressed protein

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At5g12950.1

Score 76 E Value 3e-15 Identity 27.50% Align. Length 119bp (62.96%) Frame 3

68418.m01485 expressed protein putative secreted protein SCF41.30c, Streptomyces coelicolor, EMBL:SCF41_30

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

emb|CAB88260.1|

Score 80 E Value 2e-14 Identity 29.20% Align. Length 119bp (62.96%) Frame 3

putative protein [Arabidopsis thaliana] pir||T49910 hypothetical protein T24H18.130 - Arabidopsis thaliana

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

gb|AAO42255.1|

Score 80 E Value 2e-14 Identity 29.20% Align. Length 119bp (62.96%) Frame 3

unknown protein [Arabidopsis thaliana] ref|NP_196800.2| expressed protein [Arabidopsis thaliana]

Manual Annotations

No manual annotations found.

BAC

Clone LE_HBa0163B13

Clone
Clone name hba-163b13 LE_HBa0163B13 P163B13
Clone type BAC
Contamination none
Estimated length 78,791

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

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