Genomic Clone End Sequence - Sol Genomics Network

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Clone Read LE_HBa0163C05_T7_123307

Sequence Read

Read Class

BAC ends

Read ID

LE_HBa0163C05_T7_123307

Primer

ID from Seq. Facility

LE_HBa_163_C05-T7

Chromatogram

[download]

Sequence

Version

1 (current)

Length (bp)

630 trimmed for vector and quality, 921 raw

Sequence

Show Raw Sequence

>LE_HBa0163C05_T7_123307 (trimmed for quality and cloning vector)
AGCTTCAAGAAACTTACGCTCCCACCAATGGTGATGCCCCAGAGAAAATAAGGGGAAAATCAGGCCTCTCAAATCTGAAAAATTAAAGTAAGTCTGACAA
TTTCATCAAGCCACAATTAGCGTGGCCATAACATCATCAAGCTTTTAAAAACTCACTCTCTAGGATCCAATTCAAGTAACTCCGCCACTGATTCTGACCA
TGCTACAAGCTGAGGGTTATTGACCGGTACAGAGGGTAACACTTTCGTGTAGCAAGCATGCAACACCTACAAAGACAATGTTTGAACAGATGATGACTTG
CAAAAGAATTCTATCTTCAGTTACTGACATTTCAAACTCAATGCAAACTGCATTGCTTATCACATAGGTAACAACTATATTCCACATTTTTTGCAATCAA
GGAATAATTTCTATGGCACATCCGCACGGGTATATCTCTTATAAACCTAACTTGTTAGCTAGTTATGAATAAACAATAGTCCCTCCAGCCCAATTTATAG
GGCACTCTTTCCATGTTGAGACATCTAGAATATTTGACATAATCCCATTTCTACACACTGACAACTTAAGTAATCCATTATACATTTACACTTATCAAGT
TTCAAACTTCAAATGTGAAACCCTTCTGTA

Warnings:

Not screened for repetitive elements
Not screened for chimera

Quality Report
Processed by SGN	Vector signature 5' read, flanking vector found	Quality trim threshold 12.5	Sequence entropy 0.954257	Expected error % 0.773

Sequence Annotations

Automatic Annotations

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At5g13030.1

Score 60 E Value 2e-14 Identity 77.10% Align. Length 243bp (38.57%) Frame 3

68418.m01494 expressed protein contains Pfam profile PF02696: Uncharacterized ACR, YdiU/UPF0061 family

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

dbj|BAD61584.1|

Score 60 E Value 4e-13 Identity 71.40% Align. Length 243bp (38.57%) Frame 3

putative selenoprotein O [Oryza sativa (japonica cultivar-group)]

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

gb|AAN41282.1|

Score 60 E Value 1e-12 Identity 77.10% Align. Length 243bp (38.57%) Frame 3

unknown protein [Arabidopsis thaliana] ref|NP_196807.2| expressed protein [Arabidopsis thaliana]

Manual Annotations

No manual annotations found.

BAC

Clone LE_HBa0163C05

Clone
Clone name hba-163c5 LE_HBa0163C05 P163C05
Clone type BAC
Contamination none
Estimated length 92,139

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: