Clone Read LE_HBa0020A12_SP6_132491

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0020A12_SP6_132491
Primer
SP6
ID from Seq. Facility
LE_HBa_020_A12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
489 trimmed for vector and quality, 954 raw
Genbank Accession
DU051477
Sequence
>LE_HBa0020A12_SP6_132491 (raw untrimmed)
TTTCTCTATGCCTTCCATTTACCTGTTAGGACCTTAAGACTTGAGAAGCGCAAAGCACCTTTTGTAACACCTCAGTCAAAGAAGTTTGAGTACAGAGACT
GTTATTGGGACCGAGAACGTGACAGAGACTATGATCTTATGCCTCCTCCTGGCAGTCGTAAGAAGGATTTTGCTTCTCCTGTTGATGTTGATCAACCCAT
TGATCCAAATGAACCCACCTACCGTGTGTGCCATCAGGTCTCAATTTGCTTTTATGTGCTAAATTAACTGATGTATGATTATATAGCTACAATTATCATT
CACTGTATTATTGCAGACAAATGTTTGCCTCACTTTTGACTTGTTGATTGTTCAGGTATCCTTTGGAGATATGACTGCCTGCGACAATGAAAATGTAGGT
TCCCTTTGTGCAATGGTCATTGTTTGTGACCTTTTGATGGAAACACTTCACTTTTCTTCCCTAAAGAAGATTTATGTAATGACCACTAAGAGATTTGTTT
TCATGGCAAGTGAGAAAAATCTCACACCTCAGGATTTATTCGGATTTTGGCTTTTACAAATTCCGTCATGAACAATTTAAGGTCAACATCAATCTCATGT
TTACCCAAAACCTAGTTGACTGTAACCTGGAACATTCCCCGGTAAACATGCTTCAAAAGGGCTTTCCGTGAGCGTACCAAAAATGAATGGGTTCAAAGAC
TTGCGTGATATAGAAGTCATTAAAAAATACCGCAATTGCCAAACCTTACCTTTCAATTACCTCCCTATTTTAATCTGCTTTATCGGAGATTCCTGTGATT
ATCCATTTCATCAATTTACTCTGGTCGTGCAAATGCAATTGTGTGCTTTTAATAATGAATATCTTCTCTTGCCAACTAAGAACTTGGCTTTGCTTTCAAC
TCTGAATTTGATCTTTCCTGTCTGCCAGGGCGGATGCTTCCCATCCTCGCCGGA
>LE_HBa0020A12_SP6_132491 (trimmed for quality and cloning vector)
ACCTTAAGACTTGAGAAGCGCAAAGCACCTTTTGTAACACCTCAGTCAAAGAAGTTTGAGTACAGAGACTGTTATTGGGACCGAGAACGTGACAGAGACT
ATGATCTTATGCCTCCTCCTGGCAGTCGTAAGAAGGATTTTGCTTCTCCTGTTGATGTTGATCAACCCATTGATCCAAATGAACCCACCTACCGTGTGTG
CCATCAGGTCTCAATTTGCTTTTATGTGCTAAATTAACTGATGTATGATTATATAGCTACAATTATCATTCACTGTATTATTGCAGACAAATGTTTGCCT
CACTTTTGACTTGTTGATTGTTCAGGTATCCTTTGGAGATATGACTGCCTGCGACAATGAAAATGTAGGTTCCCTTTGTGCAATGGTCATTGTTTGTGAC
CTTTTGATGGAAACACTTCACTTTTCTTCCCTAAAGAAGATTTATGTAATGACCACTAAGAGATTTGTTTTCATGGCAAGTGAGAAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960306
Expected error %
1.6187
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g54390.2 Score 90 E Value 2e-23 Identity 63.80% Align. Length 399bp (81.60%) Frame 2
68414.m06202 PHD finger protein-related contains low similarity to PHD-finger domain proteins
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g54390.1 Score 90 E Value 2e-23 Identity 63.80% Align. Length 399bp (81.60%) Frame 2
68414.m06203 PHD finger protein-related contains low similarity to PHD-finger domain proteins
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_974025.1| Score 90 E Value 6e-22 Identity 63.80% Align. Length 399bp (81.60%) Frame 2
PHD finger protein-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM20430.1| Score 90 E Value 6e-22 Identity 63.80% Align. Length 399bp (81.60%) Frame 2
unknown protein [Arabidopsis thaliana] ref|NP_564658.2| PHD finger protein-related [Arabidopsis thaliana] gb|AAN72170.1| unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0020A12
Clone
Clone name
hba-20a12
LE_HBa0020A12
C10HBa0020A12
P020A12
Clone type
BAC
Contamination
none
Estimated length
101,348
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found