Clone Read LE_HBa0028L04_SP6_138379

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0028L04_SP6_138379
Primer
SP6
ID from Seq. Facility
LE_HBa_028_L04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 935 raw
Sequence
>LE_HBa0028L04_SP6_138379 (raw untrimmed)
GGCAAACTTTTTGGAACTACCGACCGTGGGAAACGTTTTAGGGGTTTATAGTGCAGTCGACCATGTATCGGAGTTGGAGCCTTTAAAAATAAAAGCAGAG
TTCAGCAATTGCCACCTCCAAAGAACATAAACTGAGGTTATGAGCCTTCAAGGAAGGTTAAACTACAACAGCAGATTCATTGCTCAACTCACAATAACTT
GTGAGCCTATCTTTAAGTTGTTGAAAAATAATGCCTCAGTCGAGTGGACCGAATAATGTCGAGAAGCTTTTGGAAGAATTAAGAACTACCTATCG
AATCC
CCTTGTGTTGGTTCCTCCCGATCCTGGAAGACCTTTGATATTGAATATGTCAGTACTGGATAATTCTTTTGGTTGTGTACTTGGTTAGCATGATGACACT
GGGAAGAAAGATCGGGCTATTTATTACCACCACAAGAAGTTTACCGTTTACAAAGCAAAATTCACCCTTCATGAAAGAACGTGTTGTGCGCTAACTAGCA
CAGAACTTGAAACATTATCTTTCATCTTACACTACTTATCACATCTCCCGAATGGATCCGAAGAAATATCTTTTTCAAAAGCCACTGTTCACAGGCAGGC
TTGTGAAATGACCAATATTGCTCACAGAGTTAGACTTTTTCTCAATAGCTGAGACCGCAATGAAAGCTCAAGCATTGGCAATTCCTTTTGGTAGAAAACC
CAATTGATAATAATCATAACCACTTTAAACCTCTTTTCCAAAAAAAAAGATAACGTCATGCGATGAAGTATTCACGATTAACATCAAGGTCGAATTTCTC
TCCTTAAGGGGCCTCAAAACGAAAAGAAATGGGAATTGAGTCGTATTACTTCTAACCCCGGAGTATAACCCTAGTCCCCCACCTTCAGTAAGGACTATTT
TAGTTGTGGTATGAGACTTCTATTGTGCCAAAGTC
>LE_HBa0028L04_SP6_138379 (trimmed for quality and cloning vector)
AATCCCCTTGT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.5401
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0028L04
Clone
Clone name
hba-28l4
LE_HBa0028L04
P028L04
Clone type
BAC
Contamination
none
Estimated length
129,313
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found