Clone Read LE_HBa0076N05_T7_17913

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076N05_T7_17913
Primer
T7
ID from Seq. Facility
LE_HBa_076_N05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
776 trimmed for vector and quality, 820 raw
Genbank Accession
DU035582
Sequence
>LE_HBa0076N05_T7_17913 (raw untrimmed)
CTCGGTACCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTATAATCAAATTGATGCTTCTTTCAATAAGGCAGGTTTGACAAAATGCC
CTTGTGAGCATTCCCTTTATACTAAAGTTGAAAATGGAAAGTTTGTCATTGTATGATTATATGTAAATGATTTATTTTATAATGGGAATGATCATGTACT
TCTTAAAAATTTTAAGAAATTGATGATGAGTGAATTTAAAATGATGGATCTAAGCTTGATGCGTTACTTTCTGGGAATTGAAGTGAAGCACTATTATGGT
GTAATTTTTATTTCTCAAAAGAAGTATGTCAAAAAAAAATATGGAGATTTAGTATGACAAACTACAACTCTGGCACCACACCAACAGAGACATGACTGAA
ACTTGAAAAGGATACTACTTGAAAAAGGATTGACAACACTTTCTACAAGAAGATTGTGGGAAGTTTGATGTATTTAACAATCATTAGACATGATATAATG
TAATTTGTAAGTAGCATAATAAAGTACATAAAAAGTCCAAGAAAAGCTCACTTAATGGCTGCTAAAAGAATTCTCAGGTATTTGCAAGGTACTATTGATT
TTGGCATTTTATACAAGAAAATAGTAGAATCATATTTAATCGGCTTTACAAATAGTGATTATGATGGAAATAAAGATGATATAGAAGCACATTCGGTTAT
ATTTTCATGTTTGGTTCATGGTCTATTTCATGGTGCTCCAAGAAACAAACAATTGTTACATTATCAATTATTGAAGCGAAATTTGTGGCAAAAACTGTGT
GTAACATTATGTCTGAACTA
>LE_HBa0076N05_T7_17913 (trimmed for quality and cloning vector)
AGCTTGGTATAATCAAATTGATGCTTCTTTCAATAAGGCAGGTTTGACAAAATGCCCTTGTGAGCATTCCCTTTATACTAAAGTTGAAAATGGAAAGTTT
GTCATTGTATGATTATATGTAAATGATTTATTTTATAATGGGAATGATCATGTACTTCTTAAAAATTTTAAGAAATTGATGATGAGTGAATTTAAAATGA
TGGATCTAAGCTTGATGCGTTACTTTCTGGGAATTGAAGTGAAGCACTATTATGGTGTAATTTTTATTTCTCAAAAGAAGTATGTCAAAAAAAAATATGG
AGATTTAGTATGACAAACTACAACTCTGGCACCACACCAACAGAGACATGACTGAAACTTGAAAAGGATACTACTTGAAAAAGGATTGACAACACTTTCT
ACAAGAAGATTGTGGGAAGTTTGATGTATTTAACAATCATTAGACATGATATAATGTAATTTGTAAGTAGCATAATAAAGTACATAAAAAGTCCAAGAAA
AGCTCACTTAATGGCTGCTAAAAGAATTCTCAGGTATTTGCAAGGTACTATTGATTTTGGCATTTTATACAAGAAAATAGTAGAATCATATTTAATCGGC
TTTACAAATAGTGATTATGATGGAAATAAAGATGATATAGAAGCACATTCGGTTATATTTTCATGTTTGGTTCATGGTCTATTTCATGGTGCTCCAAGAA
ACAAACAATTGTTACATTATCAATTATTGAAGCGAAATTTGTGGCAAAAACTGTGTGTAACATTATGTCTGAACTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.923636
Expected error %
0.596441
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 61 E Value 3e-24 Identity 28.00% Align. Length 741bp (95.49%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51247.1| Score 101 E Value 8e-49 Identity 49.00% Align. Length 744bp (95.88%) Frame 3
copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana] pir||E86451 probable copia-type polyprotein, 28768-32772 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11200.1| Score 101 E Value 8e-49 Identity 49.00% Align. Length 744bp (95.88%) Frame 3
copia-type polyprotein [Arabidopsis thaliana] emb|CAC37622.1| polyprotein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076N05
Clone
Clone name
hba-76n5
LE_HBa0076N05
C06HBa0076N05
P076N05
Clone type
BAC
Contamination
none
Estimated length
94,871
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found