Clone Read LE_HBa0078J04_SP6_19254

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0078J04_SP6_19254
Primer
SP6
ID from Seq. Facility
LE_HBa_078_J04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 678 raw
Sequence
>LE_HBa0078J04_SP6_19254 (raw untrimmed)
TTTTTCAAAAAGGGCCCCCGATGATAAGAGGGACCCCCCCCGACCGAAGCCCCCCCTGGAGGGAATCTCTATCTTCGGAGTGGAAAATGAAGGGACGATC
CACGCGAGCAGGCTCCTCCTGTAGGGGGGCTTCTCCACATTGTGATCTTCGAGCATGTAATGAATTGGGGTTCGGGTCGTGATCTAGTGGATAATGTCGC
TCTGGATAGTATATGTTTTTAATGTGTATTTGTAATAGGAGGAGGAGAGATTACGTAGATTGGGGGACACGTGTAGAACCCAATCAGAATGAGAAGGAGT
GTTAGGGGGTGAGAGACTGGGGCGACGAGAGATACAGATTAACGAAAGACCCAGAATGTCTCTATATATGTGTCGAAAGTCGCTCTCTTGAAGAATATAG
ATTGATTGTGATCTTGTGTATGATGTAGGGAAAGTTTCTGGACGACTCAAAGCGCTCAGACTCAGCGTTAGAGATAATTCATACTATTATGTCCTTCTTC
TTAAGTACTATCTTCAGATTTTGCTGGGGGCGTGAAAAGCTGAGGGAGTGATGACGTGAAGCTAATCATCGCAAAAAAGTTATAGATTCTGCCGTATATA
TAAAGCAGCTTCGCTCATTCGCGTTCTTCCAGCACGTAACTCATCGTTCTATTAGTCAACGCACACCTGTACGTTGCG
>LE_HBa0078J04_SP6_19254 (trimmed for quality and cloning vector)
CC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.828516
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0078J04
Clone
Clone name
hba-78j4
LE_HBa0078J04
C04HBa0078J04
P078J04
Clone type
BAC
Contamination
none
Estimated length
53,397
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found