Clone Read LE_HBa0079P16_SP6_20334

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079P16_SP6_20334
Primer
SP6
ID from Seq. Facility
LE_HBa_079_P16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
747 trimmed for vector and quality, 876 raw
Genbank Accession
DU037466
Sequence
>LE_HBa0079P16_SP6_20334 (raw untrimmed)
GAAAGGGGGATAGGATACAACCCACTTGAAATATATTTAGGCAGATGATAGAATTAGTAGTCCCTTGGTTTAATAATGAAGGTAGTATGATCACATATAA
AGCCTTAATATAAAAATACAAATATGGCATAAAATACTAACAACAGAAGAAATGTATAATTTTGAATTTACAACAAAAGATATGTTATTAGGAATGCCGT
TTTTAGAATGATTTTACCCACATATTATAACAATAACACATTGGTGATTTACCACACCATGCGGAAATAAAATAGGAGCAAAAAGAGTTTATAACGAGCA
ACGTAAATCCACAGAATGGATAAAAGAAAGTGAAAAGATAAACCAAGAAATGGAAAATATAAGTAAAAATCAAATAACACAATTAGAAATTATCATATTT
ACAATAGATAAAGTCAAGATAATTAACGAACAACTAGAATTATTATATAGTGAAAATCCATTACAAGGATGGGAAAAGCATAAAACGAAAGTAAAAAATT
GAATTAATAGATGAAAAGAGTTTAATAACACAAAAACGAGTAAAATATAATTTTGATGATTTAGAAGAACTCGAAATGCATATAGATGAACTATTAAAAA
TAATTATATACAAGAGAGCAATAGTAAACATACAAGTCCAGCATTTATAGTTAGTAAACATAGTGAACAAAAACGAGGTAAAAGTAGAATGCTTATAGAT
TATCGCAACTTAAATGCTAAAACTAAAGATATAATTACTCAATACAAAATAAGATACTAAAAATAGGACAGATACAAGGATATAAATATTTTAGTAAGTT
TGATTGTAAATCAGGATTTTATCACCTGAAATTAGAAGAAGAATCTAAACAGCTAACAACTTTCCAGTACCCCAGG
>LE_HBa0079P16_SP6_20334 (trimmed for quality and cloning vector)
GAAATATATTTAGGCAGATGATAGAATTAGTAGTCCCTTGGTTTAATAATGAAGGTAGTATGATCACATATAAAGCCTTAATATAAAAATACAAATATGG
CATAAAATACTAACAACAGAAGAAATGTATAATTTTGAATTTACAACAAAAGATATGTTATTAGGAATGCCGTTTTTAGAATGATTTTACCCACATATTA
TAACAATAACACATTGGTGATTTACCACACCATGCGGAAATAAAATAGGAGCAAAAAGAGTTTATAACGAGCAACGTAAATCCACAGAATGGATAAAAGA
AAGTGAAAAGATAAACCAAGAAATGGAAAATATAAGTAAAAATCAAATAACACAATTAGAAATTATCATATTTACAATAGATAAAGTCAAGATAATTAAC
GAACAACTAGAATTATTATATAGTGAAAATCCATTACAAGGATGGGAAAAGCATAAAACGAAAGTAAAAAATTGAATTAATAGATGAAAAGAGTTTAATA
ACACAAAAACGAGTAAAATATAATTTTGATGATTTAGAAGAACTCGAAATGCATATAGATGAACTATTAAAAATAATTATATACAAGAGAGCAATAGTAA
ACATACAAGTCCAGCATTTATAGTTAGTAAACATAGTGAACAAAAACGAGGTAAAAGTAGAATGCTTATAGATTATCGCAACTTAAATGCTAAAACTAAA
GATATAATTACTCAATACAAAATAAGATACTAAAAATAGGACAGATA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.873258
Expected error %
0.301389
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF08289.1| Score 238 E Value 1e-63 Identity 59.90% Align. Length 720bp (96.39%) Frame 1
polyprotein [tobacco vein-clearing virus] ref|NP_569141.1| polyprotein [tobacco vein-clearing virus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC88785.1| Score 213 E Value 9e-57 Identity 54.60% Align. Length 720bp (96.39%) Frame 1
putative polyprotein [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079P16
Clone
Clone name
hba-79p16
LE_HBa0079P16
P079P16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found