Genomic Clone End Sequence - Sol Genomics Network

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Clone Read LE_HBa0165K19_T7_255872

Sequence Read

Read Class

BAC ends

Read ID

LE_HBa0165K19_T7_255872

Primer

ID from Seq. Facility

LE_HBa_165_K19-T7

Chromatogram

[download]

Sequence

Version

1 (current)

Length (bp)

615 trimmed for vector and quality, 961 raw

Sequence

Show Raw Sequence

>LE_HBa0165K19_T7_255872 (trimmed for quality and cloning vector)
ACCTGCAGGCATGCAAGCTTACCACGAGTCTGTTGCAACATTTGAAAGCCATGAGGACAGTTGATCAAACGATGAATGCACCGAGTGATGAAGGGAATCG
ATATTACCAAGACTCAGTAGCTCTCGTAACCAAGGGATTGGAGCTTGAAGTTGTAAGAATCTTGTTCCTGTACACCACTGTTGATCTTTCAAACAACAAA
TTTGAAGGATATATTCCAAGTATTATGGGAGATCTCATTGCACTTCGTGTGCTGAATTTATCTCATAATGGATTACAAGGTCATATACCGTCATCACTTG
GAAGTCTGTCTTCAGTTGAATCATTGGACCTGTCAGGCAACCATCTTGTAGGAGAGATACCAGCACAGTTTGCTTCTCTTACTTCTCTTGAAGTCTTAAA
TCTCTCCTACAATCATCTCGAAGGGTGCATTCCTCAAGGAAAACAATTCCATACCTTTGAGAACAATTCATATGAAGGTAATGATAGATTACGTGGATTC
CCACTTTCAGAAGGTTGTGGTAATGATTCAGAGACAAATGATACCACATCTGGACTAGACGATGAAGAAAACGACTCTGAATTTCTGAATGATTTTTGGA
AAGCTGCTCTTATGG

Warnings:

Not screened for repetitive elements
Not screened for chimera

Quality Report
Processed by SGN	Vector signature flanking vector not found in read	Quality trim threshold 20.5	Sequence entropy 0.963025	Expected error % 0.171379

Sequence Annotations

Automatic Annotations

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At3g11010.1

Score 125 E Value 1e-29 Identity 14.50% Align. Length 515bp (83.74%) Frame 1

68416.m01329 disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to disease resistance protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591

Arabidopsis proteins (TAIR10) (ath/ATH_pep)

NCBI BLAST

At1g47890.1

Score 122 E Value 1e-28 Identity 13.60% Align. Length 476bp (77.40%) Frame 1

68414.m05333 disease resistance family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

gb|AAC78592.1|

Score 272 E Value 5e-72 Identity 22.60% Align. Length 596bp (96.91%) Frame 1

Hcr2-0A [Lycopersicon esculentum]

NCBI NR non-redundant protein sequence database (genbank/nr)

NCBI BLAST

gb|AAC78594.1|

Score 268 E Value 7e-71 Identity 22.40% Align. Length 596bp (96.91%) Frame 1

Hcr2-2A [Lycopersicon pimpinellifolium]

Manual Annotations

No manual annotations found.

BAC

Clone LE_HBa0165K19

Clone
Clone name hba-165k19 LE_HBa0165K19 P165K19
Clone type BAC
Contamination none
Estimated length not yet estimated

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

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