Clone Read LE_HBa0116A01_SP6_258818

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116A01_SP6_258818
Primer
SP6
ID from Seq. Facility
LE_HBa_116_A01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
469 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0116A01_SP6_258818 (raw untrimmed)
GCTTTCAACTTTGACATTGAATGTAACAGTCATCTAACTCAACTTCGTCAAAAGAGACAAAATGGATGAAAAACCCTCAACAAACCTTCTATAATAGCTA
ATCAAACCCAAGAAACTCCAACTTATCAGTTAGAGACGTGGGTCTAGGCCAACTCTGAACTGCTTCTATCTTTTGTGTATCAACTCAAATCCCATCACCG
GAAACTATGTGGCCCAAGAATTCCACTAACTTACAAAAATTCACACCTAGAGAACTTGACATATAATTCTTAATCTTTCAAATTTCGAATGATTATCCTA
AGGTGACTAACATGATCTTCTTCATTCCTTGAATAGATTAGTATGTCATCTATGAAGACGATAACAAACACATCCAAGTAAGATTTGAAGACTATGTTCA
TAAGGTCCATGAACGTTTTTGGTGCATTATTTGGTCCTAAAAGTTGTCTTTGGAATGTCACATTCCAAACTTTCAACTAATGGTAGTGAGACCTGAGGTT
TATTTTTGAAAAATAGGTGTCACCCTAAAGTTAATCGAAAAGATCATACATCCTTTGATGAGGATACTTATTAATGATGGGAACCTTATTCAATTGACGG
TAATCTATCACTTCATAAAGGGAACCATCTTTTTTTGTACAGACATGACCGCATCCCCCCCAGGTGAAACACTTTAATCGAAGGAAACACTTTTCCTACC
ATATCTTTCAATTGTTCCTTTCCATTCTTTTAAAATCTCCCGGGGCCTATTTCTTTTTGTGGGAATTCCAGATTTTGAAAAATTTCTTTGTAAATTGTAT
TCCCTTTCCCATATTCTTTTTCTTCTTAATTCAGCATTCATCCCTCTGATTTTATTATTTTTGGATAAACTTTTTCTTATACTCTCTCTATTCTTTCATT
ATGTATTAG
>LE_HBa0116A01_SP6_258818 (trimmed for quality and cloning vector)
CAGTCATCTAACTCAACTTCGTCAAAAGAGACAAAATGGATGAAAAACCCTCAACAAACCTTCTATAATAGCTAATCAAACCCAAGAAACTCCAACTTAT
CAGTTAGAGACGTGGGTCTAGGCCAACTCTGAACTGCTTCTATCTTTTGTGTATCAACTCAAATCCCATCACCGGAAACTATGTGGCCCAAGAATTCCAC
TAACTTACAAAAATTCACACCTAGAGAACTTGACATATAATTCTTAATCTTTCAAATTTCGAATGATTATCCTAAGGTGACTAACATGATCTTCTTCATT
CCTTGAATAGATTAGTATGTCATCTATGAAGACGATAACAAACACATCCAAGTAAGATTTGAAGACTATGTTCATAAGGTCCATGAACGTTTTTGGTGCA
TTATTTGGTCCTAAAAGTTGTCTTTGGAATGTCACATTCCAAACTTTCAACTAATGGTAGTGAGACCTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947795
Expected error %
0.011693
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31171.1| Score 78 E Value 5e-28 Identity 58.20% Align. Length 367bp (78.25%) Frame 3
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 77 E Value 9e-31 Identity 56.70% Align. Length 367bp (78.25%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116A01
Clone
Clone name
hba-116a1
LE_HBa0116A01
P116A01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found