Clone Read LE_HBa0165P17_SP6_262902

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165P17_SP6_262902
Primer
SP6
ID from Seq. Facility
LE_HBa_165_P17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1536 raw
Sequence
>LE_HBa0165P17_SP6_262902 (raw untrimmed)
NNNNTTGGGTCTATTCTCTCNNATTNGTGAGNNATGGTACCAACCAATAAGAAANNNANNNTAAACATCCAACTATGCATTTGTGTTCAACTCCAAAACA
AAGNGAACCTCCCTCTTTTATAAGGAGAGATNTGTATGATGAAAAAAGAAATTAAAGAAGAATAAGAATNTGATCCCCCCTTTAAAAAGAGGAGCGAACA
TAATTATATAGTGTGAATGCTATAAATGTATTGTCACACATCCGGCACCCTTGTGTTTTTCACTTGTGAAAACTCTCGATAAGAATCTCCTCTCCATTAG
TATTCTACTACACTGACTTACGTACAATAGCGATCGATGATGATGTCACACACTCAAATGTGTACAATCTCAATTATACCCACTCTGACATCAGCTCATC
GTCGTCAACTCATCTCTTCAATATCTCGCATACCAATAGTCAATTCAATAAACAAACTCTTGCTAACTATCTTTTGCCAATACACTCCTAATACTATGTA
ATCCACACATTGATGGCTCTAACCACCCACTCGTCCTCAAATACTTCTTTCATACAAAACTCTTCTCCTCTTCTCTACTCACTAATCATCTAACATACAC
TACTTATATATCCCATACTACACTTTCTGTATATCATCTTTATTTATCTACAACATACTTAATACTACATACTCTTCCTATTCTCCCATTAACACATCGA
ATGAACCATTCACGTACACGCACGCTATGCAACAACTGCCCATGTCTTCTTTAACTATACCTCTTAACTTTCCAAATCGTAAAACTACTATCCATCTTAT
TCTATCTCTTATTCTTTCTCTATCATCTATTAACATACCCGATTATACCGCTCATATTTCATTATTCCTTCACCCATATCCAATCCACTACTATACCACT
ATATACCACATTACATCCCCATCCCCTCATAGTACCGATATTTCTATCATTTTTCTACTATTTCCTATATATATCCACATATCTCATATCAATCATATTG
ATTACTACTCACCCATCATCTCTACACTAACATCTAGTGCGCTATATAAGACACTATTATACTCACCACTCTTACTATTTCCTTCTAATCTACTTTTTAT
CACGACATACACACTTATTCCACCTATACAATAATATATCATTACATCTAAAAATGCTATCACTCTAACTATACTTACTCATCTACCCGACTGTCTACTT
CTTCATACACTTCATCTTCTCATACACTCTTCTCCCTCCTATCACCTCTAGACCTATTACTTCGTTTCTACTCTAATCCTACATTTATCATCTACATCCT
ATCCTTTCACACTTACGTCTATCTATCACTTCACCTAATTCATTTATATACGTCTGTCACTGCAGATCTCCCCCTAAACACAATCATTGACGTCAACCTG
ACACTCCCTCCATCTACTCCTGTCCACTCTTATATACTTCAATATATAACATACACACCTTACATAANTATATTACTCACCTCCCTATATCACCTTATCA
CACTCTTCACACTTTCACTTCTCTCACTATACCCCA
>LE_HBa0165P17_SP6_262902 (trimmed for quality and cloning vector)
N

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165P17
Clone
Clone name
hba-165p17
LE_HBa0165P17
C09HBa0165P17
P165P17
Clone type
BAC
Contamination
none
Estimated length
76,172
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found