Clone Read LE_HBa0092A12_T7_26519

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092A12_T7_26519
Primer
T7
ID from Seq. Facility
LE_HBa_092_A12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
714 trimmed for vector and quality, 873 raw
Sequence
>LE_HBa0092A12_T7_26519 (raw untrimmed)
GAATAACCCGGTCCCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAAACCATGAAAATTCAAGTCAATTAAATCTTTTGTGTCAAGTCCA
TGAATCATCTACAATTTCATTTTTTAATGCATTGTAATGAAATTGCAAAGGGAAGTTTCTTTTTATCATCTTTACTTCAACAATGACTTGATTTGGCTCA
AAATTATCATAAATCTTGCAATAATTATCTCTAAACACAAGAGAATAACCATTTTCCATGAGTTGACCAACACTAAGCAAATTTTCTTCCAAGTCAGTAA
CATAAAGAACATCATGAATTTGCTTACCGCATCCTTTCATGTTGATCGAAATAGTACCTTTACCTTTCGTATCAACTAAGGTTCCATTCCCCATCTTCAC
TTTAGTAGTGATGCTATTATTAATTGAGAGGAAAGTTTTTTCATCTCCAGTCATGTGATTACTACAACCACTATCAACATACCATTCATTACTTTTTGTT
GAAGCATCAGATTTAGAAGCAAAGAAAAGATTTTATTCCCTTTCTTCCTCATGTTTTTCACAAAAATTTGTTTGCTCCCGTTTCTTGTGCCAACAATCCT
TTTCAACGTGGTCAAACTTTTTACAAAAGTTACATTGGGGCTTGGCTTTGTGCCAATATTTTTCTGCATTGTGATTAGTCCTTTTTGCAAACTTTACAAA
AAAGACTAAAGTTTTTTCTCACATTTTTCTTCAATCATCTTGGAAGAACCATCACCATCCTGCTACTTTTTCGGCTTTTGATTTTTCTTCCGAAAAATAA
TGGAGAAATTTTACAACTCCTCATTACATTTGACTAGAAAGTCGTCTCTGCGGCTGACTCTTCACTAAAAATT
>LE_HBa0092A12_T7_26519 (trimmed for quality and cloning vector)
AGCTTTAAACCATGAAAATTCAAGTCAATTAAATCTTTTGTGTCAAGTCCATGAATCATCTACAATTTCATTTTTTAATGCATTGTAATGAAATTGCAAA
GGGAAGTTTCTTTTTATCATCTTTACTTCAACAATGACTTGATTTGGCTCAAAATTATCATAAATCTTGCAATAATTATCTCTAAACACAAGAGAATAAC
CATTTTCCATGAGTTGACCAACACTAAGCAAATTTTCTTCCAAGTCAGTAACATAAAGAACATCATGAATTTGCTTACCGCATCCTTTCATGTTGATCGA
AATAGTACCTTTACCTTTCGTATCAACTAAGGTTCCATTCCCCATCTTCACTTTAGTAGTGATGCTATTATTAATTGAGAGGAAAGTTTTTTCATCTCCA
GTCATGTGATTACTACAACCACTATCAACATACCATTCATTACTTTTTGTTGAAGCATCAGATTTAGAAGCAAAGAAAAGATTTTATTCCCTTTCTTCCT
CATGTTTTTCACAAAAATTTGTTTGCTCCCGTTTCTTGTGCCAACAATCCTTTTCAACGTGGTCAAACTTTTTACAAAAGTTACATTGGGGCTTGGCTTT
GTGCCAATATTTTTCTGCATTGTGATTAGTCCTTTTTGCAAACTTTACAAAAAAGACTAAAGTTTTTTCTCACATTTTTCTTCAATCATCTTGGAAGAAC
CATCACCATCCTGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.922075
Expected error %
0.809776
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP46257.1| Score 142 E Value 8e-33 Identity 12.20% Align. Length 632bp (88.52%) Frame 2
putative polyprotein [Oryza sativa (japonica cultivar-group)] ref|XP_470160.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38758.1| Score 138 E Value 1e-31 Identity 13.30% Align. Length 623bp (87.25%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092A12
Clone
Clone name
hba-92a12
LE_HBa0092A12
C12HBa0092A12
P092A12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found