Clone Read LE_HBa0196C12_SP6_278845

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196C12_SP6_278845
Primer
SP6
ID from Seq. Facility
LE_HBa_196_C12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
526 trimmed for vector and quality, 966 raw
Genbank Accession
DU095708
Sequence
>LE_HBa0196C12_SP6_278845 (raw untrimmed)
CCCCGGCTATGGCTTGAGGAGAGTANAGAAGCTCTTCGACTTCTCGATGAGCTTCGACTTCAGGGTTATCATCCTGACTCTCTCAATCTCAGCAGCATTG
TTCACGCTCTCTGTGATTCTAAACGATTTTCCGAAGCCCACCGGCGATTCCTTCTCGCTGTTTCTTCCCAGTCAACTGTCCCTGATGAGCGAACCTGTAA
TGTTCTCATTGCTCGCTTGCTTTACGCAGCTAATCCGCAAGAAACTGTGCGTGTTATTTCCGCTTTGTTCTACCAGAAGCCCCAGTTTGTACCTTCGTTG
ATGAATTACAACCGTCTAATCCATCAGCTTTGTACTTTAGAAAGAAATAGAGATGCCCATCAGCTGTTTGTTGATATGAGAAAGAGAGGACATTCTCCTA
ATGCTGTTTCGTATACTACTTTGATCGATGGGTATTGTGGGGCTGGGGAGGTTGGGGAAGCTGAGAAGCTGTTTGATGAAATGTCTGAGTGCGGTGTGAT
ACCTAATGCACTCACTTATAGTGCTTTGATTAGGGGGATTCTTCGAAAGCGGGACATCTACCATGGAAAACAACTGATTAGGAAGCTTTGGGACGTGATG
CTCACTGAAAGACGACATGGCATGTTAACAATGCTACATTTTGCACTGTGATCAATTGCTTGTGTAAAGGAAGGGTCCTTTCTTGAAATGTTTAATAATT
GTTGAACACTTCCCTTATGGGTAAAAGTGCTGGTCAGGATTTTTATTTATCCCCAAATGAATAGACTTCCCTGTCTATACTTCTGGCAGGATTTTTAGGG
GCTTTTTCGCATACTCTTTTCGTTTACAACTACTGTGACTCTTATCCTGATTTACTTCTCCTATAAAAAATATGTTTACATGTGTCTTCCTTCACGCTTG
CCTTTTCTCTCTCCCAGCCTTTTCTCTTTTTTCCGGTATAACCGTGCAATCTCTCTGGGTCTCTTT
>LE_HBa0196C12_SP6_278845 (trimmed for quality and cloning vector)
AGCTCTTCGACTTCTCGATGAGCTTCGACTTCAGGGTTATCATCCTGACTCTCTCAATCTCAGCAGCATTGTTCACGCTCTCTGTGATTCTAAACGATTT
TCCGAAGCCCACCGGCGATTCCTTCTCGCTGTTTCTTCCCAGTCAACTGTCCCTGATGAGCGAACCTGTAATGTTCTCATTGCTCGCTTGCTTTACGCAG
CTAATCCGCAAGAAACTGTGCGTGTTATTTCCGCTTTGTTCTACCAGAAGCCCCAGTTTGTACCTTCGTTGATGAATTACAACCGTCTAATCCATCAGCT
TTGTACTTTAGAAAGAAATAGAGATGCCCATCAGCTGTTTGTTGATATGAGAAAGAGAGGACATTCTCCTAATGCTGTTTCGTATACTACTTTGATCGAT
GGGTATTGTGGGGCTGGGGAGGTTGGGGAAGCTGAGAAGCTGTTTGATGAAATGTCTGAGTGCGGTGTGATACCTAATGCACTCACTTATAGTGCTTTGA
TTAGGGGGATTCTTCGAAAGCGGGAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973534
Expected error %
0.158663
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g18020.1 Score 211 E Value 2e-55 Identity 60.60% Align. Length 524bp (99.62%) Frame 3
68416.m02290 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g16640.1 Score 96 E Value 1e-20 Identity 32.80% Align. Length 521bp (99.05%) Frame 3
68418.m01948 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01330.1| Score 211 E Value 1e-53 Identity 20.20% Align. Length 524bp (99.62%) Frame 3
unnamed protein product [Arabidopsis thaliana] ref|NP_188429.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP86200.1| Score 99 E Value 4e-20 Identity 35.40% Align. Length 524bp (99.62%) Frame 3
pentatricopeptide repeat-containing protein [Raphanus sativus] emb|CAD80164.1| fertility restorer homologue C [Raphanus sativus]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196C12
Clone
Clone name
hba-196c12
LE_HBa0196C12
C03HBa0196C12
P196C12
Clone type
BAC
Contamination
none
Estimated length
92,973
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found