Clone Read LE_HBa0103D18_T7_32819

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0103D18_T7_32819
Primer
T7
ID from Seq. Facility
LE_HBa_103_D18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
579 trimmed for vector and quality, 809 raw
Sequence
>LE_HBa0103D18_T7_32819 (raw untrimmed)
TTCGGGTCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACAACTTTGTGTTCTTGACCCTTTTCGACAATCCTTCTGGTTGTTTCGTGTA
AACTTCTTCCTTTAGATCACCCTTTAAAAATACAGTCTTCACATCCATTGATGTATTACCTGATTAGAGTTGCTCGCTAAAGCAATCAAGAGTCGAATGG
AATTCATTCGAGCTACCGGTGCAAAGGTATCAAAATAATCAATATCTTTCAGTTGAGTAAAACCTTTTGCTACCCAGCGAGCTTTGTACTTATCTAAGGT
TCCATCAGATTTTAATTTAGTTCTAAATATTCATCAAAGCCTGAATAGAATTACATTCAGGAGGAAGGTCTAATAAAATTCATGTACTATTTGACATAAT
ACAATGTGGTTCATCATCGATAGCTTCACGCCAAAAAGGAGCACCATGTGAAGTCATTGCTTCAGCATAACTTTCAGGATTCCTTTCAACTAAATAGACT
TGAAAATTTGATCCAAAATCTCTTGATTTGACTGATCTTGCACTACGTCTTGGTTTACTTTCTTCCAGAGGTTGAACCACTTATCTTTTAAGAGTAGACA
AAGAACTTGTTTTTTGTTTGAACAATTCTTTATTCTAAGGAAATATTTGCTCAAAAAACGTTAGCATGCAAATTATTCCATAAAGTGTGATGGCTTCGTA
TATCTTAATGTTTAAAATAATCTTTTAAGGCTTGGTAGTTTGGTGAATTGCCATGGATATTTCACATTTTCTTCCTCGAAAGTCTAACTTTAGAACGAGT
GTCGACTTC
>LE_HBa0103D18_T7_32819 (trimmed for quality and cloning vector)
AGCTTACAACTTTGTGTTCTTGACCCTTTTCGACAATCCTTCTGGTTGTTTCGTGTAAACTTCTTCCTTTAGATCACCCTTTAAAAATACAGTCTTCACA
TCCATTGATGTATTACCTGATTAGAGTTGCTCGCTAAAGCAATCAAGAGTCGAATGGAATTCATTCGAGCTACCGGTGCAAAGGTATCAAAATAATCAAT
ATCTTTCAGTTGAGTAAAACCTTTTGCTACCCAGCGAGCTTTGTACTTATCTAAGGTTCCATCAGATTTTAATTTAGTTCTAAATATTCATCAAAGCCTG
AATAGAATTACATTCAGGAGGAAGGTCTAATAAAATTCATGTACTATTTGACATAATACAATGTGGTTCATCATCGATAGCTTCACGCCAAAAAGGAGCA
CCATGTGAAGTCATTGCTTCAGCATAACTTTCAGGATTCCTTTCAACTAAATAGACTTGAAAATTTGATCCAAAATCTCTTGATTTGACTGATCTTGCAC
TACGTCTTGGTTTACTTTCTTCCAGAGGTTGAACCACTTATCTTTTAAGAGTAGACAAAGAACTTGTTTTTTGTTTGAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953906
Expected error %
1.86772
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 69 E Value 2e-16 Identity 44.30% Align. Length 262bp (45.25%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39287.1| Score 84 E Value 2e-15 Identity 33.20% Align. Length 560bp (96.72%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR13298.1| Score 82 E Value 1e-14 Identity 21.90% Align. Length 182bp (31.43%) Frame 1
gag-pol polyprotein [Phaseolus vulgaris]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0103D18
Clone
Clone name
hba-103d18
LE_HBa0103D18
P103D18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found