Clone Read LE_HBa0220A02_SP6_384007

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220A02_SP6_384007
Primer
SP6
ID from Seq. Facility
LE_HBa_220_A02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1425 raw
Sequence
>LE_HBa0220A02_SP6_384007 (raw untrimmed)
ATGCGTCCCGGGTATCCAAGTAAACTTCCCCGTGAGAATGGCAAGGCCACCNGACTCATACTGTTGCCATTGGACACGGCTCGCTCTTTGACGGTGAATA
CGACTGTAGAAGCTTCTGTAGAAGCTCGATATGACGTGTGTCCCGCTTTCTCTGTAGGCGCCACAGTCTTGAATGTAGCATCCTGTCTAGCGTAGTGCGC
AAAACCCGAGGATGAGTACTGGTATTTACGCGAAGTTGATGATCGCGAAAGAGTGCACTATCTGTGCGTATCCGCATATCTGACGAGATATCCCCTGACA
CAAGGGAAAGCTCTTGGTCTGCACTCAATTCCACCGACTTTCTTATGTTCCCGATAGTAGTGTGACGACTATTGCTGTGACATTCTGATACCATATAAGT
GTAGAAGAACTTGACTTTAGCAGCCTGAAATAGCCGATTCTGCGAATGATTCGAGTTACACTCCAGTGAAACTAGTCCACATACAGATATTGACTGCAAT
CGAAGCTGCGGGTTGCATGAGATAGTTCGTCACATCGGATGAAAGAATCGATGACGCACGGTCATCGAAAGCACTACGCGCTGGCTACACCGTGAGATCA
CACCGCTGGAGATCCTATAGAGTGCTTGAGCCCAATCGATTGAAAGTATCCATCATCCCGAGCGATAAGTATCGGTGGTCCTCAACGCCACGAGAACTCT
AAACCGGCATCTGGTCGCAGTGTACCACATATCATCGGCGACATAGCCGACAGATCTTATAGGACTCCCAGAGTAGCCATCACCTGCGGTGAGCACGTGC
CACCGTTGAAAAACATATGAACGGCCGGAGTGGTGTATATACTGACTGCGGGTAACGGCATGGGGATCATATCGACTGTTTTGCCTTGTACCTTCTAAAT
AGTCAACGGGTCATACTGTGTTCATATGTGCTGAACCTCGACGCAAGTCTTAAATGCATTAACTAGATCACAATGTTGGCCACGATCACCTTGAAATCAT
GATACAGGTGGCCGCTTAATATTCTAATCGCCTTTTACACTGATTGTCTAAACATAGAAAATACGACTCCCCCGCCATTGAACCCTTCCTCCCGAAAACC
TCTAAATTTATGTTAATAGAACGGATAATACCCCCGAAAAGTTATTTCTGGATACCATTACTCCCGGCACCAATTTGACGCGTCATCATGTCCTCTCGGG
GAATGTGGAGTAATCCCAATACCTGGAGTGCTCCCCATCACTCTCTAACAAATATTTTCAAATATATCTATTATTATGGAGAAGGCTTACACTTTACAAC
ATTCATTTTCCGAGAAACCCTCTATTCACCCGATGATTTGGATTTTCCTTCTTGGACATACATTCAAAGACACCGTGTTAAATCGTCACTGGCGCCGACG
CGGACCTTTATTCTCCTCCCAGAGG
>LE_HBa0220A02_SP6_384007 (trimmed for quality and cloning vector)
AA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.04304
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220A02
Clone
Clone name
hba-220a2
LE_HBa0220A02
P220A02
Clone type
BAC
Contamination
none
Estimated length
93,719
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found