Clone Read LE_HBa0117A21_SP6_39592

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0117A21_SP6_39592
Primer
SP6
ID from Seq. Facility
LE_HBa_117_A21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
754 trimmed for vector and quality, 915 raw
Genbank Accession
DU086866
Sequence
>LE_HBa0117A21_SP6_39592 (raw untrimmed)
GCCGAGGATTCATTCCACCACTCGTATATCCAGAGTCAGGTGCTTTCCCCAACAATTTGATACAGACTGCTTCACATGAAGTATATGTCACACCTATAAC
AGCCTCACCATCAACTGGTAGCCCAAGCAAGTACGCGACATCCTCAAGGGTAACAGTCATTTCCCCAACAGTGAAATGGAATGTGTTTGTTTCTCTTCTC
CATCTCTCAACTAGGGAAGATATGAGTGGGTTATCCAAACTGATTGCCGGTATCATTCTCAAATAGCCAAATCCAGCCATTTTAACCAACTCAACCTGTT
TCTCTGTGAGCATCCACTGATCGAGCTTTGATGTGTGCTCATGGCACCTAAGAGCACCACGCTCCTGTCAACAGTGAAAATAAGCCATTCAAGCCTTGTC
TAAAACACTAAGTTGCTGTCAAGTGTGATTTGTCAAAAAAAGGGAGGAAGTTTAGCTTAGTGAATACCTGCCCCTCCCAAACAGCAGATGATACATGTTT
ATCTTGATCGTACAGCACAATATCCTCAACTGGTCCAGGGTTAGTTGCATAGTAGTCCACCATTACTGCTTATGACATACCTCTGAAACAAGACAAACTT
AGCAATCTATTAAGAAAAAAATTGCAGTGTCATTTGAAAAATACAATGCAACTTAACTGCATCACAAAGTTGCAAATGCAAGAAAAAAATTACAGCAACT
CTATATTACAAGGTTAACTTATTCTTTTGTTTACAAGATACTGCCTGCTAGTATTTATGTTTTTGGGGAAGGTACCTAGAGAAGGAAATTCCAAATACTT
TGTTGGCTTATTGGTTTAACAATGAAGCACAAAATTCTTCTTATCACAAGGTTCCACCTCCATGAAACGATACCCCTTCACTTTGCATATTTCATTGCTT
TCAACACACAGCAGG
>LE_HBa0117A21_SP6_39592 (trimmed for quality and cloning vector)
ACTCGTATATCCAGAGTCAGGTGCTTTCCCCAACAATTTGATACAGACTGCTTCACATGAAGTATATGTCACACCTATAACAGCCTCACCATCAACTGGT
AGCCCAAGCAAGTACGCGACATCCTCAAGGGTAACAGTCATTTCCCCAACAGTGAAATGGAATGTGTTTGTTTCTCTTCTCCATCTCTCAACTAGGGAAG
ATATGAGTGGGTTATCCAAACTGATTGCCGGTATCATTCTCAAATAGCCAAATCCAGCCATTTTAACCAACTCAACCTGTTTCTCTGTGAGCATCCACTG
ATCGAGCTTTGATGTGTGCTCATGGCACCTAAGAGCACCACGCTCCTGTCAACAGTGAAAATAAGCCATTCAAGCCTTGTCTAAAACACTAAGTTGCTGT
CAAGTGTGATTTGTCAAAAAAAGGGAGGAAGTTTAGCTTAGTGAATACCTGCCCCTCCCAAACAGCAGATGATACATGTTTATCTTGATCGTACAGCACA
ATATCCTCAACTGGTCCAGGGTTAGTTGCATAGTAGTCCACCATTACTGCTTATGACATACCTCTGAAACAAGACAAACTTAGCAATCTATTAAGAAAAA
AATTGCAGTGTCATTTGAAAAATACAATGCAACTTAACTGCATCACAAAGTTGCAAATGCAAGAAAAAAATTACAGCAACTCTATATTACAAGGTTAACT
TATTCTTTTGTTTACAAGATACTGCCTGCTAGTATTTATGTTTTTGGGGAAGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969755
Expected error %
0.229664
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g04865.1 Score 184 E Value 3e-56 Identity 75.90% Align. Length 522bp (69.23%) Frame 2
68415.m00502 expressed protein ; expression supported by MPSS
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g17930.1 Score 136 E Value 1e-35 Identity 60.00% Align. Length 480bp (63.66%) Frame 2
68414.m02219 expressed protein similar to hypothetical protein GI:4559351 from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_671779.1| Score 184 E Value 1e-54 Identity 75.90% Align. Length 522bp (69.23%) Frame 2
expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM62582.1| Score 140 E Value 5e-35 Identity 62.70% Align. Length 480bp (63.66%) Frame 2
unknown [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0117A21
Clone
Clone name
hba-117a21
LE_HBa0117A21
P117A21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found