Clone Read LE_HBa0118I17_SP6_40736

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118I17_SP6_40736
Primer
SP6
ID from Seq. Facility
LE_HBa_118_I17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
848 trimmed for vector and quality, 929 raw
Genbank Accession
DU059979
Sequence
>LE_HBa0118I17_SP6_40736 (raw untrimmed)
GAGCAACTATAGCAAGTGTGAGGTAATCTTTGAATTTGTAAATTCTTACAAATTCCAGTTAAAAGTTTCCCGAATCAACTTTATCACATAACATAGAAAA
ATCATGTATGATGTTCTTCCTGTTAAAGATATCATCTCATAATAATGTACGCTTTCTACAAATTTGTTACTCATCATGATATACCAAGTCATGTGAATTA
GTTATCAGTTACAGAACGCAGTGCTTAGACTGTCAAGCATCTTAATTATGCTAGAGTATCACAGTAGTTTTCATTCACTAGAAAGTTTTCTTTATAGTTT
CTGCAAAGTCACTTGGTCCTCAAGTTAAGCACCTTTATTGTTTGTTCATTTCAGCTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGT
TGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAGGTAGAAAGC
ATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTG
AGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGA
TTAACACAATTGAGCAGGTGATCTCCGTGTAATTATGCTGTACATTGGGTTTCCACAACCCACACTATTGTTTTTCCTCATATATTATGGAATGCAGTAA
ATATGTCTTTTGATTATAATGACCTTATCTTTCCTGTGTTAAATTAATTTTAAATCATGCATGTACAATCACAGTATTTCCATACAGCAAAGTGGCAGTG
TCATGTAAGAAAGTTGGAAGAATTTTATT
>LE_HBa0118I17_SP6_40736 (trimmed for quality and cloning vector)
AATCTTTGAATTTGTAAATTCTTACAAATTCCAGTTAAAAGTTTCCCGAATCAACTTTATCACATAACATAGAAAAATCATGTATGATGTTCTTCCTGTT
AAAGATATCATCTCATAATAATGTACGCTTTCTACAAATTTGTTACTCATCATGATATACCAAGTCATGTGAATTAGTTATCAGTTACAGAACGCAGTGC
TTAGACTGTCAAGCATCTTAATTATGCTAGAGTATCACAGTAGTTTTCATTCACTAGAAAGTTTTCTTTATAGTTTCTGCAAAGTCACTTGGTCCTCAAG
TTAAGCACCTTTATTGTTTGTTCATTTCAGCTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGT
TCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAGGTAGAAAGCATCAGGAACTTAATAATGGGACTG
GTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGAT
ATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAGGTGATCT
CCGTGTAATTATGCTGTACATTGGGTTTCCACAACCCACACTATTGTTTTTCCTCATATATTATGGAATGCAGTAAATATGTCTTTTGATTATAATGACC
TTATCTTTCCTGTGTTAAATTAATTTTAAATCATGCATGTACAATCAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963332
Expected error %
0.225406
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g46420.1 Score 72 E Value 6e-24 Identity 57.40% Align. Length 369bp (43.51%) Frame 1
68418.m05713 16S rRNA processing protein RimM family contains weak similarity to Swiss-Prot:O74933 UDP-N-acetylglucosamine pyrophosphorylase [Candida albicans]; contains Pfam profiles PF01782: 16S rRNA processing protein RimM, PF05239: PRC-barrel domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10810.1| Score 72 E Value 3e-22 Identity 57.40% Align. Length 369bp (43.51%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_568663.2| 16S rRNA processing protein RimM family [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU10657.1| Score 56 E Value 7e-13 Identity 44.40% Align. Length 363bp (42.81%) Frame 1
unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118I17
Clone
Clone name
hba-118i17
LE_HBa0118I17
C02HBa0118I17
P118I17
Clone type
BAC
Contamination
none
Estimated length
66,320
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found