Clone Read LE_HBa0041F03_SP6_42868

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041F03_SP6_42868
Primer
SP6
ID from Seq. Facility
LE_HBa_041_F03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1138 raw
Sequence
>LE_HBa0041F03_SP6_42868 (raw untrimmed)
GGGGGCCGCACCCCCGTCCCAGGCTAGTGCAAANCCTNCNNCCCCCCCCCCCNNCAATACACCACCACACAACAAACCCACAAACACACACCCAATCCCC
TTTTTTAATTTAACATCTATTCCATCATTATCCCAAGGGGGCATCCACTTTCCATCACCTCACCATTCTCTCTATCCACANTTCCTTCCCAATATCTTCT
TAACCACATTATCACACACCTACACCTATATATCACTATCATTTAACAACATTTATATCCTACCTATTCTATTATCAATATAATACATTATTTATTCTCA
ATACTTCTTCTGGTAAAACACTACCCCAATTTCTAAATCGACTTCTCAATAACACAATAATTTACATAGATTCATTCTTCACATTCATTCACTTATACAA
TTAAACTCATACTAA
TATAAACTAACTACACCTCTACTATTTTCTTCTCTCAAACATGAGGGAATCTCAAGCTGAAGTGTGGAAGACCCCTCGGAGCATA
CAGTGCTCACACTTTCAGCTCGCGGATAAGTCTCTGCCCTAACTCCTCGTCTTGGCGGCGACCACTATATGGCATCATACAATGGCGACCTGCCTCAACT
GATGCCATCCGTCCTGTTGAGAGATCTAGCCGACCACTATATCTTTATTCCGGTGTAATGCGGGTAAATACTACTCCAGATACTTACCTTGTCTGTGCCT
CTACATATGTCCCTATGACCCTCTACATCCTCTTTTTGTTCTGAACGATCGTGAATCTCATGTGATTAGTAACTTAAGCATTAGCTTACAGGTTCCTTAC
ATGGACCACGCACCTTCACGCTTCGGCAGCACTACAACGCCGCACCTAAACGCTGACTCATTATCTGGCATAATATATTTATACGCCTTCCTGACAAGAA
TTTATTGCTTTCCTTATCTCTATAATCTCATGCGTCTTAACTATGTTGCCGAAACACCTTGCTATATACCCGTGTCTTTCTCACCCACTGCCAATCGCAC
GTACCACCTTCTACTCGAACATCTAGCTGCTGGCTCGACAGGTCCCTCGGTAGCACAGGTAACTACTTCATCGAAAGACAGCCGTCTCGCCCGCTAGTTC
CTCGCGTCCCGGTAGTGCGCAAGCGTAATTCCACAATT
>LE_HBa0041F03_SP6_42868 (trimmed for quality and cloning vector)
TATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.418976
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041F03
Clone
Clone name
hba-41f3
LE_HBa0041F03
P041F03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found