Clone Read LE_HBa0041O24_T7_43343

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041O24_T7_43343
Primer
T7
ID from Seq. Facility
LE_HBa_041_O24-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 989 raw
Sequence
>LE_HBa0041O24_T7_43343 (raw untrimmed)
TGCCAGCCCAGACAGCGAAGAGATCTATATCGCTGTAATCTTGGCTTGCGGTGCGCACCCCATACAGAGGAAGAAGCTGCGATCGCAAAAGATACCTGCA
AAATAGCTAATGCGTAGTATAGCAAAAGAATAGAATCACTTGAGATNGACCGATCCATGACTCTACGAGTGAAAGTCGAATGTGCTGAACATCCCGCGAA
CCGGAATCCGCGACCACAGCATGCGGCNATCTGTCATGAACAATACACTTTTACATGCAGGGTTGGACTGATGTGTCTGCGCGGATTCTGTACGTCGAGA
CTCATCTGATCATGACATTCACGTAGTAGATACTCGTTGTATGTGTACGTTGNACAGGAGTACGCGGAGGTCTCGTATGACAGCGACAGACGATACTACG
TACGGTAGCCTTTCTCTCCGAACGATCTTGTGACAAACGAGCAGATATATATATACTTTCTCTCGCCCCCGCGACTACTTCTTGCGTCGTAAACACTCAC
AGCAGATATGATCTCTATTGAGTTCGCGAATTACAATAAACAAACACCGCCTCTAAGATCNGCAGCGCGCCGCCTACGTTCGTCCATNCAGCACATCGGC
AAGGCTTACAGACTAAGCCGCTGCCACGTTCGGAACGACAGCACGANGTCCCACATAATTTAACGNCTCGACGGCACCCGCTATAGAAATGCAGTGGCTA
CAATTCTTGTCCTGCAGAATCAGATTGATTGGAATCATGTCTAAGACCGACTCACAACACATAGAGAATGACTGATCTGTCAACGAATGTCGTGCGAAGA
CGAACGGGCACCCGACTGTTTACCTCGAAAGTACTCACGATAGAGACGTTGATCGAAAGGCAACTCACACTAAATCACACCGTGACCCGGANCTCGCCGG
CTGGGGCTGCGTCCCAACCGCAGACAGGTAAGACGGACGGTTGTTCTACTGTAGGGCCGAAGATNTAGAAATAATATGGTGAATTCTAA
>LE_HBa0041O24_T7_43343 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041O24
Clone
Clone name
hba-41o24
LE_HBa0041O24
P041O24
Clone type
BAC
Contamination
none
Estimated length
106,527
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found