Clone Read LE_HBa0067E11_SP6_51284

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067E11_SP6_51284
Primer
SP6
ID from Seq. Facility
LE_HBa_067_E11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
682 trimmed for vector and quality, 836 raw
Sequence
>LE_HBa0067E11_SP6_51284 (raw untrimmed)
AAAATGGATTCCNTNAGCATATTGAGGAGCTCAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCT
CAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCT
TCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAAT
ATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAG
TCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGC
CATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATA
ATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGACACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGT
GTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCCCTTTCTTTTTTTGTTTTTCTTTT
TGATAATTAAGGTTAAAGCCTTAATCTTGGAACACA
>LE_HBa0067E11_SP6_51284 (trimmed for quality and cloning vector)
GCTCAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCAT
ATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCA
ATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTG
TGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGA
GGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCAT
CTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTAC
CTAAGAACGGACGGTCTGCGACACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGA

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956176
Expected error %
0.125492
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067E11
Clone
Clone name
hba-67e11
LE_HBa0067E11
P067E11
Clone type
BAC
Contamination
none
Estimated length
97,107
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found