Clone Read LE_HBa0002D23_SP6_52796

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0002D23_SP6_52796
Primer
SP6
ID from Seq. Facility
LE_HBa_002_D23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
651 trimmed for vector and quality, 762 raw
Genbank Accession
DU078366
Sequence
>LE_HBa0002D23_SP6_52796 (raw untrimmed)
GTATTTAGTTTAAGTTAGGGAATCATCAATGGGAGTTGAATTGATGGTGATAATCTCTTCATGGTATCAGAGCCCCTTTGTCTAATTGGTCCTGTTTTGA
AGTCGAATTGTGAGCCCTTTTTTGTTGTTGTTATCAACTGATTCGATTGACTGATTGAGAGGTTGTATTGTGAATTGTTTTGGTTTCTTCTTCTTTCCAA
CTGATCGAAGAAACACATTCATAGCTGGAATCTAGCAAGTTGTAGATTGTTTTTTTTTGTGTTAGATCTATCATAGATATTCAAACACAATGACTGGCCC
TCAAGTTGGAGATGTTGCTTCTGGTTCAACCACATCTCGTTTGGATTTTTCCAGTCCCTTTTATCTGCATCCTTCAGAGAATGCAGGATCATCATTGTTA
CCTGGAGTTTTCGATGGTACTGGTTACAGATCTTGGAGAAGAGCAGTCCTCAGAGCACTATCAGTTAAGAGTAAAACAGGTTTTATTAATGGAGCAATTG
TGAAGCCTATATCCACTGATCCTAACTTCATGCAGTGGGAAAGATGTGATGATATGGTCACATCTTGGATCTTGAATTCTTTGTCTCCAGAGTTGCGCGA
TAGCCTGCCATATGTGAATAATGCCAAGGAGTTATGGGCAGAATTAGAAGAAAGATATGACCAAACAAATGGATGCAAATTGTATCAGTTACAGAAGGAG
ATAAATGAACTTGTTCAAGGTACTTTATACGCTCAAAACTTACTTCTCAAATGAGAAGTAAG
>LE_HBa0002D23_SP6_52796 (trimmed for quality and cloning vector)
AGTTGAATTGATGGTGATAATCTCTTCATGGTATCAGAGCCCCTTTGTCTAATTGGTCCTGTTTTGAAGTCGAATTGTGAGCCCTTTTTTGTTGTTGTTA
TCAACTGATTCGATTGACTGATTGAGAGGTTGTATTGTGAATTGTTTTGGTTTCTTCTTCTTTCCAACTGATCGAAGAAACACATTCATAGCTGGAATCT
AGCAAGTTGTAGATTGTTTTTTTTTGTGTTAGATCTATCATAGATATTCAAACACAATGACTGGCCCTCAAGTTGGAGATGTTGCTTCTGGTTCAACCAC
ATCTCGTTTGGATTTTTCCAGTCCCTTTTATCTGCATCCTTCAGAGAATGCAGGATCATCATTGTTACCTGGAGTTTTCGATGGTACTGGTTACAGATCT
TGGAGAAGAGCAGTCCTCAGAGCACTATCAGTTAAGAGTAAAACAGGTTTTATTAATGGAGCAATTGTGAAGCCTATATCCACTGATCCTAACTTCATGC
AGTGGGAAAGATGTGATGATATGGTCACATCTTGGATCTTGAATTCTTTGTCTCCAGAGTTGCGCGATAGCCTGCCATATGTGAATAATGCCAAGGAGTT
ATGGGCAGAATTAGAAGAAAGATATGACCAAACAAATGGATGCAAATTGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955198
Expected error %
0.165155
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g21280.1 Score 68 E Value 4e-12 Identity 12.00% Align. Length 332bp (51.00%) Frame 3
68414.m02659 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89730.1| Score 120 E Value 4e-26 Identity 15.00% Align. Length 353bp (54.22%) Frame 3
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD25646.1| Score 104 E Value 2e-21 Identity 12.60% Align. Length 389bp (59.75%) Frame 3
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||E84589 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0002D23
Clone
Clone name
hba-2d23
LE_HBa0002D23
P002D23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found