Clone Read LE_HBa0062P09_SP6_54880

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0062P09_SP6_54880
Primer
SP6
ID from Seq. Facility
LE_HBa_062_P09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
351 trimmed for vector and quality, 836 raw
Sequence
>LE_HBa0062P09_SP6_54880 (raw untrimmed)
CCCCGGGTTTCTCCGGTATGGAAACACTTGCTTCGACAATGCAATCAAGTCTTTTGATTTTGATAAATGTCTTGATGACTCTTGTGTGTACAAAAAGTGG
AATGGGGATAAAGTGGTGTCTTGGGTATTATATGTAGATGATATCTTGATCATTGGAAATCATGTGGGCTTGATGAATTCAGTTAAGGGATGGTTGTCCA
CTAATTTTGATATGAAGGATTTGGGAGAAGCTGCTCACATCCTTGGGATCAAGGTTCTACGTGATCGCAAGAAAAGGATGTTAGGTTTATCTCAAACCCT
ATATATTGATACAATTCTTTCCAGGTTTTGCATGCATGAATCCAAAAAAGGATTTCTTCCTTTCACACATGGAATTTCTTTATCTAAGGATCAATGTCCT
AAGACAGATGAGGAAATATAAAGCATGAAGACTGTTCCTTATGCATCAATAGTTGGAAGTTTCATGTATGTGATGTTTTGCACTAGACCTGATATTTATT
TTGTATTATGCATGGATTAGCAGATAAGTGTCTATTCTTATACTGATATCCTTATAATCTTTCTATAAATTTATATTTTATCTTTTGAATAATGACTAAT
CATTGCATGTTAATTTATTTCTTAAATGATTTGTTATCTCAAAATTTATTTTTCTCTCATTATTCCATTTAATATTTTTACATTATTAAAATCCAACTTC
CAACTATTCTATTTATCTCTTGTTTTTTGGTATCTTATTTCTCTGTCTTTTTTTTTTCCTTTTTCTGTTTCATTCTATCCTATTCTAATATTCATTTATC
TTTAATTACATATCTTATTTTTTATTCATCTTTTCC
>LE_HBa0062P09_SP6_54880 (trimmed for quality and cloning vector)
AGTCTTTTGATTTTGATAAATGTCTTGATGACTCTTGTGTGTACAAAAAGTGGAATGGGGATAAAGTGGTGTCTTGGGTATTATATGTAGATGATATCTT
GATCATTGGAAATCATGTGGGCTTGATGAATTCAGTTAAGGGATGGTTGTCCACTAATTTTGATATGAAGGATTTGGGAGAAGCTGCTCACATCCTTGGG
ATCAAGGTTCTACGTGATCGCAAGAAAAGGATGTTAGGTTTATCTCAAACCCTATATATTGATACAATTCTTTCCAGGTTTTGCATGCATGAATCCAAAA
AAGGATTTCTTCCTTTCACACATGGAATTTCTTTATCTAAGGATCAATGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.944369
Expected error %
0.563822
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA22288.1| Score 147 E Value 7e-35 Identity 20.00% Align. Length 344bp (98.01%) Frame 1
polyprotein [Oryza australiensis]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80804.1| Score 144 E Value 1e-33 Identity 19.40% Align. Length 344bp (98.01%) Frame 1
putative retrotransposon protein [Arabidopsis thaliana] gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana] pir||T01860 reverse transcriptase homolog T7M24.7 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0062P09
Clone
Clone name
hba-62p9
LE_HBa0062P09
C12HBa0062P09
P062P09
Clone type
BAC
Contamination
none
Estimated length
135,442
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found