Clone Read LE_HBa0074L20_SP6_55478

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074L20_SP6_55478
Primer
SP6
ID from Seq. Facility
LE_HBa_074_L20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
731 trimmed for vector and quality, 849 raw
Genbank Accession
DU080111
Sequence
>LE_HBa0074L20_SP6_55478 (trimmed for quality and cloning vector)
ACCTTACTCCTTCGTGAGAGCATCCTCACAGGTCCTGATGGAAGGCCTGAGGATTGTGAGTTTGCTTTCCCATCAATATGTGGAAACACAATATGGTCCC
TTTTTGGAGTCCCAATTTTAGGAATGATCTTGTGGTCCCTGGGCAGAGGTAGGTTTTGGTAATTCTTTTAACACATAATAAGAACATGAATGGTTCAGGA
TTCCTTGAAGTTGCAGATGAAACTTACATACAGTATATCAAGATACGTCTGGGCAAAAGATCATTCCAAGCCCTTTTCTGGATGTTTTTGTCATAATGGG
AGGCCTCAAAAGAAATGCATCTTAGAAAAGTCAACAAGAAAACACAAAACATGAGATGCCAAATACTTCTGTCCTCAAGTATTAATGTATTATATAATCA
AAGCACTCAAAATCAAGACAATAAGATCAAGGAAACCTTGGTAAGCATCTGCGGTGATATGCCCTTGGACAGCGTCTACAAATTGCAAATTGCAACTCAA
ATTCCTTCTTATCCTCCCCTTGCTTGCAGACGGAACATTTATGAGCAGGGCAAGTAAATGATTCTCCAGCTACGATTTCCTTCTGCAGCTCTAAGGATCG
ACATTTATCACCCGGATAAAGTAACTCTGAGACGCATTTAGGATGAAAGAAGTGTCCACAAGTTGCCGAAATGCAAGGGAAGACCTTTGGGAAATTGTGC
AAATTAAACGTAGGTGAGCAATTCGGATATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973638
Expected error %
0.10533
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g55390.1 Score 119 E Value 2e-32 Identity 54.20% Align. Length 642bp (87.82%) Frame 1
68418.m06901 hydroxyproline-rich glycoprotein family protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g48090.1 Score 76 E Value 2e-14 Identity 15.30% Align. Length 188bp (25.72%) Frame 2
68418.m05941 expressed protein ; expression supported by MPSS
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_481740.1| Score 121 E Value 2e-26 Identity 19.80% Align. Length 251bp (34.34%) Frame 2
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAD03388.1| unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAD01750.1| unknown protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB08556.1| Score 119 E Value 1e-30 Identity 54.20% Align. Length 642bp (87.82%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_200350.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074L20
Clone
Clone name
hba-74l20
LE_HBa0074L20
C10HBa0074L20
P074L20
Clone type
BAC
Contamination
none
Estimated length
111,007
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found

‹March 2025›
SuMoTuWeThFrSa
2324252627281
2345678
9101112131415
16171819202122
23242526272829
303112345
‹March 2025›
SuMoTuWeThFrSa
2324252627281
2345678
9101112131415
16171819202122
23242526272829
303112345
‹March 2025›
SuMoTuWeThFrSa
2324252627281
2345678
9101112131415
16171819202122
23242526272829
303112345
‹March 2025›
SuMoTuWeThFrSa
2324252627281
2345678
9101112131415
16171819202122
23242526272829
303112345