Clone Read LE_HBa0123B16_SP6_58062

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123B16_SP6_58062
Primer
SP6
ID from Seq. Facility
LE_HBa_123_B16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1209 raw
Sequence
>LE_HBa0123B16_SP6_58062 (raw untrimmed)
GTGTCCTCAGTAATCTTGACACACGATAACAACGNCAGACANCGCGTAACGGCTCTTCCCTCCTCATACAGACACAGNGCGCNTGTAGACAGATCAGCGC
TCCTCGTCGCGTGCATCATTTCTCTGACACCTGTCAGATNTGATCTCACACATACGACTATCACTTTCTACACTGTTACGNATGTACNAGTTTGCGTAGC
AAGTCTTACGATAATGTGCGATCACGNCACCTGTTGAATGTGAGATACTNACCAACGTNACTAACTTCTCCGTGTGGCTACCTGAGAAGCTCAAGAACAT
CCCACCAACATGCACTGTAGTCACAACAACTGCCCAGTTGTACACTTGTGCGATCTATAGAACTTGNCTGGTACAATCGACGTCTAACTGTGATGATGCA
GTGTTTATATATCGATCGTACGTTCGATAGATATACGGAGCGTACTCTCTATANTGATGATCTGTCACCTTNCGCGAGCGTGATATTGTTGACACGCTGA
ATAGAGCATTCGCACACTGCAAGAGTCTCTGCTGCCACCATACCGANCTCTCACGACAACGACACCACACAATCCGCACTCCGCTCGANATCGAGAGCGA
CGAGATGTACTGTGTAGAGGTGATGTGTCTCAGGGCNGCGCCNCACGCTTCTGCGATTATCGTCGTCGCGTCCTNACTCCTTGCGTTGCTCTANGTAGTT
CTATTACTAGTGGTAGTGACTGCCGTTACCTCTATGCTAACTGTCAATCATGTTGCATCTCATGCCTGCAAACGCTGTGGTCGCGTTCGATGTCGGAGGT
ACACGCATCGANATAGCACTGAACCGCCCGCTCGTCTCCGTCACATTGGGACNTTCTATACTCACCTCACGTTACTACTCTACAGTCATATGCTCGCGTC
TGATTNTAAGTACTGCAGACTCCTGTCACTGCTGCTGACTATATACTCACACTACTTAATACACTCGTATACTAACTCTAACAGGGTGACGNTGCGTTGG
GCACGCGNGATGTCGNCAGTGCTACTNCAGTAACTGCACACGTACCTATCTTCCTATCCACCTCACCGACTATAGCATNTACCTCTCGCTCGTATCTTCG
ACGACTACCACGACAGTCTTACACTTCGGCACTGCAACTCTCACACACNGTCTCTGATCTGTGTAACACCGGGACCTGCTTGCACACTGTGCTTACGCCA
TAAGCTCAA
>LE_HBa0123B16_SP6_58062 (trimmed for quality and cloning vector)
TG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.08258
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123B16
Clone
Clone name
hba-123b16
LE_HBa0123B16
C12HBa0123B16
P123B16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found